Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T27A3.1a
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Query: T27A3.1a CE14217 status:Partially_confirmed TR:P91503 protein_id:AAB42296.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HAP1_N HAP1 N-terminal conserved region 581.5 5.2e-171 1
bZIP bZIP transcription factor 11.3 0.11 1
DUF302 Domain of unknown function DUF302 7.6 1.3 1
PspA_IM30 PspA/IM30 family 5.1 3.6 1
HALZ Homeobox associated leucine zipper 4.4 9.9 1
COX4 Cytochrome c oxidase subunit IV 4.3 7.3 1
Rep_trans Replication initiation factor 3.1 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HALZ 1/1 155 171 .. 18 34 .. 4.4 9.9
bZIP 1/1 145 181 .. 29 65 .] 11.3 0.11
DUF302 1/1 192 231 .. 83 123 .] 7.6 1.3
Rep_trans 1/1 223 259 .. 189 226 .. 3.1 9.6
COX4 1/1 253 267 .. 107 121 .. 4.3 7.3
PspA_IM30 1/1 255 284 .. 37 66 .. 5.1 3.6
HAP1_N 1/1 1 287 [. 1 336 [] 581.5 5.2e-171
Alignments of top-scoring domains:
HALZ: domain 1 of 1, from 155 to 171: score 4.4, E = 9.9
*->keendsLqkendeLrAe<-*
k+en++L++e d Lr+e
T27A3.1a 155 KSENERLRQECDLLRQE 171
bZIP: domain 1 of 1, from 145 to 181: score 11.3, E = 0.11
*->eeLeekveeLeaeNkaLrkelerLkkevakLksenee<-*
e L+e+ ++ ++eN++Lr e + L++e+a + ++++
T27A3.1a 145 EALRERLKSTKSENERLRQECDLLRQESAIVTAQKNS 181
DUF302: domain 1 of 1, from 192 to 231: score 7.6, E = 1.3
*->egDGkvivgyidprqlvtlygidedeaeaeeakaeekikkt<-*
++D kvi+ ++ ++q+ t++++ ++ ++ +++ ++k+kk+
T27A3.1a 192 TND-KVISLQKLIEQKTTELNQQYENTGKLMNELADKDKKE 231
Rep_trans: domain 1 of 1, from 223 to 259: score 3.1, E = 9.6
*->ekqadlsdeaklrwarkqvgkalnrllislfegdltel<-*
e+ +++ e++++ ++ ++g+ l ++ i++++++++e+
T27A3.1a 223 ELADKDKKERMISMEKEEMGAILIEM-IQRHDTMQAEH 259
COX4: domain 1 of 1, from 253 to 267: score 4.3, E = 7.3
*->kTmnkEWQeaqleyl<-*
+Tm+ E++e+q++y+
T27A3.1a 253 DTMQAEHKEMQDQYA 267
PspA_IM30: domain 1 of 1, from 255 to 284: score 5.1, E = 3.6
*->meselakarqalAqviArqkqlerkleeqk<-*
m++e+++ ++ A+++A+++++e +l++++
T27A3.1a 255 MQAEHKEMQDQYAELMANFAETESELNKLR 284
HAP1_N: domain 1 of 1, from 1 to 287: score 581.5, E = 5.2e-171
*->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
+++++++++l++++++fmi+++++++sd+++++s+++avs++sp++t
T27A3.1a 1 MSQDKYGINLKMQSSHFMIVAKFSIFSDILGGFSNVWAVSRMSPTPT 47
retlkYflLCanRVsqmtktydDIdavtrLLEEKerDLELAArIGQsLLk
r++++++++Ca ++++D+++++++LE+K++DLELAA+IGQsLL+
T27A3.1a 48 RNSSPLDPSCA-------LNELDCNGLMVILEKKNHDLELAAKIGQSLLE 90
qNkvLeerNekLEeqLgkarDeivQLrHELnkkdELLrvySdadDDgEdE
qNk+L+++Ne+LEe+++k++D+ivQL+HELn+++ELLrvyS++dDDg
T27A3.1a 91 QNKDLQTKNEFLEESVNKNLDTIVQLKHELNQRIELLRVYSHLDDDG--- 137
EDEEEEEGEEEEResqcstplkhnesysapKPPtkaeTlqkslqLEaLqe
l++s+++EaL+e
T27A3.1a 138 --------------------------------------LPRSNSDEALRE 149
KLKsLeeENerLRsEAsqLktET.ityEeKEqqLvldcVkqLreANdQma
+LKs+++ENerLR+E+++L++E+ i++++K+++++l+ kqL+++Nd+++
T27A3.1a 150 RLKSTKSENERLRQECDLLRQESaIVTAQKNSSYLLE--KQLDYTNDKVI 197
sLseeLekkteelerQqEeitkLlaeiadlqkklkslsvekEElqqhLaa
sL++++e+kt+el++Q+E+++kL++e+ad++kk++++s+ekEE++++L++
T27A3.1a 198 SLQKLIEQKTTELNQQYENTGKLMNELADKDKKERMISMEKEEMGAILIE 247
eKdaqrqltaElkElqDryaEclamlhEaQeelKklRsrS<-*
+++++++++aE+kE+qD+yaE++a+++E+++el+klRs++
T27A3.1a 248 MIQRHDTMQAEHKEMQDQYAELMANFAETESELNKLRSTG 287