hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T27C10.5
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Query:  T27C10.5  CE28494   protein kinase status:Partially_confirmed TR:Q9TZM4 protein_id:AAK73897.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                          160.4      3e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1     476   766 ..     1   289 [.   160.4    3e-44

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 476 to 766: score 160.4, E = 3e-44
                   *->yelleklGeGsfGkVykakhkd..ktgkiVAvKilkk..........
                      +++ + lG+G+fG V++a+ + +++  ++VA K+l + +++++++++
    T27C10.5   476    LKRSRMLGRGAFGFVFRATVRQpnGELCEVAQKMLEPvdpgpggrps 522

                   .....ekesikek............rflrEiqilkrLsHpNIvrligvfe
                         +  +k+k+++ +   +   + + E+++l r++HpN++ l gv++
    T27C10.5   523 alaayKAAADKWKrdsmefacraycTSRQELSLLSRMKHPNVIGLVGVCT 572

                   dtddhlylvmEymegGdLfdylrrng...gplsekeakkialQilrGleY
                       +l lv E+++ G L+++l ++++ +++ls   +k  a Q++r+leY
    T27C10.5   573 F---PLSLVVELAPLGALNQLLGSHRkagTKLSLGVIKESAVQVARALEY 619

                   LHsngivHRDLKpeNIL.......lden.dgtvKiaDFGLArllessskl
                   LHs +i++RDLK+eN+L+ + + +++ ++d  +K++D G++r + +s+ +
    T27C10.5   620 LHSAHIIYRDLKSENVLgwrfpapFSPQtDVLLKLGDYGISRSVLPSGGA 669

                   ttfvGTpwYmmAPEvileg...rgysskvDvWSlGviLyElltggplfpg
                   ++f+GT ++m APE+ ++ +++ +y+ kvD  S+G+ LyEllt
    T27C10.5   670 KGFGGTEGFM-APEI-VRFngeEEYTQKVDCFSFGMFLYELLTL------ 711

                   adlpaftggdevdqliifvlklPfsdelpktridpleelfriikrpglrl
                                       k Pf+ e     ++  e+++++ +    +l
    T27C10.5   712 --------------------KFPFESE-----EHVKERMLDGARP--VLL 734

                   plpsncSeelkdLlkkcLnkDPskRpGsatakeil<-*
                   p+  +++ +++dLl  c+   P++Rp   +  +++
    T27C10.5   735 PHELLLPTPMLDLLVHCWSAHPESRP---SSSQLV    766

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