Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T27E9.1
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Query: T27E9.1 CE14263 ADP\/ATP carrier protein status:Confirmed TR:O45865 protein_id:CAB04874.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 289.6 3.9e-83 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
mito_carr 1/3 11 109 .. 1 125 [] 115.1 1.3e-30
mito_carr 2/3 116 211 .. 1 125 [] 109.5 6.3e-29
mito_carr 3/3 213 300 .] 1 119 [. 71.0 5.1e-18
Alignments of top-scoring domains:
mito_carr: domain 1 of 3, from 11 to 109: score 115.1, E = 1.3e-30
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+fl +l++Gg+A+a+++t+++P+++vK LQ+q +s
T27E9.1 11 KFLIDLASGGTAAAVSKTAVAPIERVKLLLQVQDAS----------- 46
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
k+ +++ ++Ykgi+d++ ++ ke+G + ++L++G+++n+
T27E9.1 47 -KAIAVD----------KRYKGIMDVLIRVPKEQG-V--AALWRGNLANV 82
lrvapygaaiyFgtYEqlKklllkkkge<-*
+r++p+ +a++F++ +++K +l +++
T27E9.1 83 IRYFPT-QAMNFAFKDTYKAIFLEGLDK 109
mito_carr: domain 2 of 3, from 116 to 211: score 109.5, E = 6.3e-29
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
f+ +l++Gg+AGa++ +++yPlD+++tRL ++ +++++
T27E9.1 116 FFAGNLASGGAAGATSLCFVYPLDFARTRLAADIGKAND-------- 154
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
r++kg+ dc+ kivk++G+i gLY+G+ +++
T27E9.1 155 -----------------REFKGLADCLIKIVKSDGPI---GLYRGFFVSV 184
lrvapygaaiyFgtYEqlKklllkkkge<-*
+++++y +a+yFg +++ K ++ +++++
T27E9.1 185 QGIIIY-RAAYFGMFDTAKMVFASDGQK 211
mito_carr: domain 3 of 3, from 213 to 300: score 71.0, E = 5.1e-18
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+f++ + + + + + +++yP D+v++R+++q++++
T27E9.1 213 NFFAAWGIAQVVTVGSGILSYPWDTVRRRMMMQSGRK---------- 249
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
+ Yk++ldc+kki+++EG + ++ +kG + n+
T27E9.1 250 ----------------DILYKNTLDCAKKIIQNEG-M--SAMFKGALSNV 280
lrvapygaaiyFgtYEqlKkll<-*
+r + + a+ +++Y+ ++k+l
T27E9.1 281 FRGTGG--ALVLAIYDEIQKFL 300