hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T27E9.9
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Query:  T27E9.9  CE24020   ligand-gated ion channel status:Partially_confirmed TR:Q9U358 protein_id:CAB04879.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Neur_chan_LBD  Neurotransmitter-gated ion-channel lig   216.7    3.6e-61   1
Neur_chan_memb Neurotransmitter-gated ion-channel tra    57.2    4.9e-16   2

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Neur_chan_LBD    1/1      52   261 ..     1   246 []   216.7  3.6e-61
Neur_chan_memb   1/2     268   347 ..     1    80 [.    41.2  2.6e-11
Neur_chan_memb   2/2     375   396 ..   270   291 .]    19.4  6.9e-05

Alignments of top-scoring domains:
Neur_chan_LBD: domain 1 of 1, from 52 to 261: score 216.7, E = 3.6e-61
                   *->etrLlddLlentvsgYdkrvRPvnggdvPpvtVsvgltlqqiisVdE
                      ++ ++  +l++    Y+k+  P  gg+   v+Vs+++++q ++++ E
     T27E9.9    52    DDAIIAQILDG----YNKLDLP-GGGH---VVVSIEIWVQEVSKIIE 90

                   knqdlttnvwlrqgqWtDpRLaWnpsdplddeddyggikslrlpsddehd
                   ++ ++++++++++ +WtDp La+ +++        ++  ++++++    +
     T27E9.9    91 ITSEFELDIYVTE-RWTDPSLAYSHLN--------PCKSNMSVDGA---T 128

                   mldkIWlPDiflyNqttskadgnhdvttpntnvrvypglkdGtVlwsppa
                   +l+kIW P+ +++N   sk + +h+++++n+++++y+   +G+++ ++++
     T27E9.9   129 ILNKIWNPHACFVN---SKLANIHESPFKNIFLQIYS---NGSIWHNYRI 172

                   iykssCpmdltyFPFDqQnCslkFgSwtYngdevdlqwkdd.......le
                    ++ +C+  l+ FP DqQ C+l  +S+t+n+d+v+++w ++ ++ +  +
     T27E9.9   173 KLTGPCSSTLRTFPIDQQRCMLFYESFTHNTDQVKMEWITTvppitilKG 222

                   eidLpdFtengeWdlldvpakrnekpygcyselsgagLnklvYpditfyf
                   +i Lpd+ + +++   +     + +p g ++el               +f
     T27E9.9   223 NITLPDYVLVDFSSSSE----LRLYPPGIFNELI-------------ATF 255

                   vlrRkp<-*
                   +++R +
     T27E9.9   256 TFQRLY    261

Neur_chan_memb: domain 1 of 2, from 268 to 347: score 41.2, E = 2.6e-11
                   *->liiPCvLIsfLswLvFyLPsDaGPeKvtLgIsvLLtlTvFlllirei
                      +++P    +f sw++F L ++  P ++t+g++ LL+lT  +  + +
     T27E9.9   268    VYVPAYISVFISWVSFTLGAEQIPSRTTVGVNSLLALTFQFGAVVNN 314

                   lPkTSlvvPLigkYllFtMfvvtasieyavvvl<-*
                   lPkTS v+++++++l   +f ++++ie avv +
     T27E9.9   315 LPKTSDVKAIDVWILSSMAFIFASLIELAVVGY    347

Neur_chan_memb: domain 2 of 2, from 375 to 396: score 19.4, E = 6.9e-05
                   *->vIDRlflwiFpivfvlGTlgyf<-*
                      +ID ++ ++Fp+ f++++++y+
     T27E9.9   375    KIDQMSSIVFPVSFLAFNIWYW    396

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