hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T28D9.10
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Query:  T28D9.10  CE02065   Autoantigen small ribonucleoprotein status:Confirmed SW:Q10013 protein_id:AAA68313.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Sm       Sm protein                                      67.2    1.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sm         1/1       5    70 ..     1    55 []    67.2  1.2e-17

Alignments of top-scoring domains:
Sm: domain 1 of 1, from 5 to 70: score 67.2, E = 1.2e-17
                   *->sfLkklidkrVlVeLknGreirGtLkgfDqfmNlvLddveEtl....
                      +fL+kl +++V +eLknG+++ Gt++g+D  mN +L+ v +t+++++
    T28D9.10     5    RFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVknke 51

                   .......liRGnnvvlisp<-*
                   + + ++  iRGnn+++i++
    T28D9.10    52 pvkldtlSIRGNNIRYIIL    70

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