hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T28D9.2a
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Query:  T28D9.2a  CE29826  locus:rsp-5 splicing factor status:Confirmed SW:Q10021 protein_id:AAA68314.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
rrm      RNA recognition motif. (a.k.a. RRM, RBD, or     56.2    4.3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
rrm        1/1       4    67 ..     1    77 []    56.2  4.3e-15

Alignments of top-scoring domains:
rrm: domain 1 of 1, from 4 to 67: score 56.2, E = 4.3e-15
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      l+ g +p++  e+d++++ + +G+i++i +++             Gf
    T28D9.2a     4    LYLGKIPYNGHERDVERFLKGYGKINNISMKY-------------GF 37

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aFV+Fe+++dAe+A  +l+Gk+ +g  +r
    T28D9.2a    38 AFVDFEDSRDAEDACHDLDGKTMEGSSMRL    67

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