Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T28H10.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T28H10.3 CE14367 vacuolar processing enzyme like status:Confirmed TR:Q17945 protein_id:CAB01126.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C13 Peptidase C13 family 465.2 5.5e-136 1
Plant_viral_rep Plant viral-response family 3.4 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Plant_viral_rep 1/1 4 25 .. 147 168 .] 3.4 9.6
Peptidase_C13 1/1 4 344 .. 1 362 [] 465.2 5.5e-136
Alignments of top-scoring domains:
Plant_viral_rep: domain 1 of 1, from 4 to 25: score 3.4, E = 9.6
*->LtililivglYafaagkygsrr<-*
L +li+i++l+++ ++y r+
T28H10.3 4 LALLICIIVLFLVTEARYNPRK 25
Peptidase_C13: domain 1 of 1, from 4 to 344: score 465.2, E = 5.5e-136
*->avfllvvLlilavvaardnfddnielpsEevkffrDddghttrWAVL
+ +l+ ++ +++v++ar n+ + + +D+ + +VL
T28H10.3 4 LALLICIIVLFLVTEARYNPRKGLAAGRQRKHKYQDEGE---AFVVL 47
VAGSnGwfNYRHqADVChaYqllkrgGikdEnIIvmmYDDIAcNerNPrP
VAGSnGw+NYRHqADV haY++l+ Gi++EnII+mmYDD+A+N+ NP
T28H10.3 48 VAGSNGWYNYRHQADVAHAYHTLRNHGIPEENIITMMYDDVANNPLNPYK 97
GvviNhpnngtDvYgGdVpkDYrGeeVTvenFlaVLlGdksavtggSGKv
G+++N+p +g+D+Y+G +DY+G +VT+enFl VL+G++s gg G v
T28H10.3 98 GKLFNRP-HGKDLYKG-LKIDYKGASVTPENFLNVLKGNASGIDGGNGRV 145
LlSgpnDniFIYyTDHGGpGvLkFPdseelyakDLadtlkkmhaskrYke
L +++nD++F+Y+TDHG+ G + FPd l++k L+d+l mh+ k Y+
T28H10.3 146 LETNDNDRVFVYFTDHGAVGMISFPDG-ILTVKQLNDVLVWMHKNKKYSQ 194
lVfyiEACeSGSmfegllppdlNIyAtTASnaeEsSystycdgeipsPPp
l fy+EACeSGSmfe l +d++IyA++A+n++EsS++t+c +
T28H10.3 195 LTFYLEACESGSMFEEVLRSDMDIYAISAANSHESSWGTFCE--ND---- 238
eyvtcLgDlYSvaWlEdsekhnlskeTlqqqYksvkkrtclyntysyGSH
+ cLgDl Sv+W++ds+ ++l++eTl qY++vkk+t+l SH
T28H10.3 239 MNLPCLGDLFSVNWMTDSDGEDLKTETLEFQYELVKKETNL-------SH 281
VmqYgDlgiskeklvlfqGffpasrNfspvdepplrkplevvnqRDadLh
Vmq+gD+ i ke + lfqG + + +++ + +++ + RD++L
T28H10.3 282 VMQFGDKDIAKEAVALFQGDKEDRE-YVEDFGLS-ASKSVNWPARDIELN 329
tlwrkyqlanngsek<-*
+l +++++n+ ++
T28H10.3 330 HLISQHRKSNDLLSS 344