Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/VW02B12L.1
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Query: VW02B12L.1 CE18980 locus:vha-6 vacuolar ATP synthase status:Confirmed TR:Q17660 protein_id:CAA90758.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
V_ATPase_sub_a V-type ATPase 116kDa subunit family 1069.3 0 1
DUF483 Protein of unknown function (DUF483) 12.6 0.048 1
WWE WWE domain 6.5 2 1
Ribosomal_S5 Ribosomal protein S5, N-terminal domai 5.4 5.9 1
WIF WIF domain 3.8 7.2 1
Viral_Beta_CD Viral Beta C/D like family 3.8 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S5 1/1 103 119 .. 1 17 [. 5.4 5.9
DUF483 1/1 162 181 .. 119 138 .] 12.6 0.048
WIF 1/1 235 248 .. 132 147 .] 3.8 7.2
Viral_Beta_CD 1/1 530 538 .. 125 133 .] 3.8 4.6
WWE 1/1 658 683 .. 44 74 .. 6.5 2
V_ATPase_sub_a 1/1 26 854 .. 1 876 [] 1069.3 0
Alignments of top-scoring domains:
Ribosomal_S5: domain 1 of 1, from 103 to 119: score 5.4, E = 5.9
*->dLeekVldinrVsKvtk<-*
+Lee++++in +Kv k
VW02B12L.1 103 KLEEELVQINKNCKVLK 119
DUF483: domain 1 of 1, from 162 to 181: score 12.6, E = 0.048
*->IgtlikdeFetileLeemLk<-*
I++ kdeF+++ + e++Lk
VW02B12L.1 162 ISFGMKDEFDKPVKDEKELK 181
WIF: domain 1 of 1, from 235 to 248: score 3.8, E = 7.2
*->gNntpLrfkrkqEKIC<-*
++++ Lr k k KIC
VW02B12L.1 235 FSGEQLRAKVK--KIC 248
Viral_Beta_CD: domain 1 of 1, from 530 to 538: score 3.8, E = 4.6
*->yPFGrspse<-*
yPFG++p +
VW02B12L.1 530 YPFGVDPVW 538
WWE: domain 1 of 1, from 658 to 683: score 6.5, E = 2
*->aagkkfgsvtldqvsicgrhYtidfetmtqy<-*
aagk+ ++ v+ ++++Yti++++++q+
VW02B12L.1 658 AAGKE----WVI-VNGQNVTYTINDQCYLQQ 683
V_ATPase_sub_a: domain 1 of 1, from 26 to 854: score 1069.3, E = 0
*->vsaLgelGlVqfrDlnedvsnaFqRkfvnevrRcdeverkLrylese
v++LgelG qf Dlne+ + a RkfvnevrRcde+erk + e+e
VW02B12L.1 26 VAELGELGMAQFIDLNEEQN-AYTRKFVNEVRRCDEMERKINFVEDE 71
ikklgiplksveldtgaqpdvpppkinyPpssselldleekleelEeeik
i+k++ p++ d +++ ++p+pk ++ ++e++le+lEee+
VW02B12L.1 72 ITKDLVPIP----DYDEHIPAPQPK--------HMGEMEANLEKLEEELV 109
eveenlesLekelneLeewrnvLdetksffeenaddsGveeleas.gdn.
++++n + L+++ +L e ++vL+ s++++ s +e+ +s +
VW02B12L.1 110 QINKNCKVLKNNHVQLLEMKAVLEHVTSLLDPH---SK-REAAMSiSEAa 155
.....selsnlddefkalrageylrlgsgasveslstmeqlkakLdfvaG
+++ + +++ def ++ +e fv+G
VW02B12L.1 156 rgeagPISFGMKDEFDKPVKDEKELK--------------------FVTG 185
vinreklealeriLwralrgNlyirqaeieepleDpkTGEpvhktvfiif
v++r+k+ a+er Lwr r+ +++++ i e +e +E + k+vfi f
VW02B12L.1 186 VVKRSKAIAFERFLWRLSRAKVFAKFIQIQEQTELFS-NEFEDKCVFILF 234
fvgkeildkvkkIlesfgfelydvpetegersellskvnkriedlqtvLe
f g++++ kvkkI+++f ++ y vpe++ er+ ll +++++ +d + v+e
VW02B12L.1 235 FSGEQLRAKVKKICDGFQAKCYTVPENPAERTKLLLNIKVQTTDMKAVIE 284
qteshlekvlakiadellawdeqvskeKavyetlnlfnydvtrkcliaeG
+t +++ k + ++a +l+ w +++ k K++++tln+f++dvt+kcliae+
VW02B12L.1 285 KTLDYRSKCIHAAATNLRKWGIMLLKLKSIFHTLNMFSVDVTQKCLIAEC 334
WvPakdleklqsaLenategsgslvpsilndietnetPPTylktnkFtap
WvP++d+ +++ L +t +sgs+vp iln++et + PPTy+k nkFt++
VW02B12L.1 335 WVPEADIGQVKNSLHMGTIHSGSTVPAILNEMETDKYPPTYFKLNKFTQG 384
FQmIvdaYGipkYrEvnPapftiiTFPFlFGvMfGDiGyGllmfliALlL
FQ+IvdaYGi+ YrEvnPap+tii FPFlF+vMfGD+G+G++m+++A ++
VW02B12L.1 385 FQNIVDAYGIANYREVNPAPWTIISFPFLFAVMFGDAGHGIIMLIAASAF 434
vllekklgakkikdEIfqMfFkgryIlllmGvFSIytGfiYNdcFgksln
v ekkl +kikdEIf++fF+gry++llmG F+IytGfiYNd+ +ks n
VW02B12L.1 435 VIFEKKLISMKIKDEIFNTFFGGRYVVLLMGMFAIYTGFIYNDFYSKSVN 484
iFgsgwkwpamas........................vieWsdtiksget
iFgs+w++p ++++ + + ++ +++++ + + +++i
VW02B12L.1 485 IFGSSWVNP--YNqtllanmdaqgadsntdlsltfppEI----------- 521
ltlapsvggvfgGpYPfgidpiwngaeNkLlFlNSykmklSiilGviHmt
a++++ GpYPfg+dp wn+a N+L+FlN +kmk Si+lG+ +m
VW02B12L.1 522 ---AFNHD---YGPYPFGVDPVWNLAINRLNFLNPMKMKTSILLGISQMA 565
fGlflgffNhvkfkskidikgafipqlifllsIfGYLvilIiYKWlvdwa
fG++l++ Nh+ ++s +di+++fipq +fl +If YL+++++ KW ++++
VW02B12L.1 566 FGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKWIFFYV 615
ktgtvlGy.YPGskpaPslLigLInMFLfpgRNAGFTlDdGk........
k + +G YPGs++aPslLigLInMF+++ R A F D+G +++
VW02B12L.1 616 KPAYIFGRlYPGSNCAPSLLIGLINMFMVKSRDASFAHDVGTaagkewvi 665
.............CYLsqLYPGQavvQviLvvlalacvPvlLlgkplflm
++++ + + +++CYL q+YP Q+ v+ iL+++a++ vPv+Ll+kp++ +
VW02B12L.1 666 vngqnvtytindqCYLQQWYPNQSLVELILLLIAVVSVPVMLLVKPFYIR 715
regkkrkkgGhr.hGyirvgvereresaqqeeesedlgnqdeesvasald
+++++ g+h +
VW02B12L.1 716 WRHSR---GLHIdL------------------------------------ 726
aeeeevGgg..ehEefefGevmihQvIhtIefcLGcvShTaSYlRLwALs
G g++eh+ef+fG++m+hQ+IhtIef+LGcvShTaSYlRLwALs
VW02B12L.1 727 ------GHGpdEHGEFNFGDIMVHQAIHTIEFVLGCVSHTASYLRLWALS 770
LAhaqLSsVlwtMvirigfesigsagvgvialvvvf.aivfvlghailli
LAhaqLS+VlwtMv+r+ + ++g +g +a+ ++f +i+ +l+++il++
VW02B12L.1 771 LAHAQLSDVLWTMVLRMSLTMGG--WGGSAAITILFyFIFSILSVCILIL 818
MegLSAfLHaLRLHwVEFfsKFYeGgGrkFePFsfk<-*
MegLSAfLHa+RLHwVEF+sKFY G+G FePF f+
VW02B12L.1 819 MEGLSAFLHAIRLHWVEFQSKFYGGTGIQFEPFCFT 854