hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W01A8.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  W01A8.2  CE18304    status:Partially_confirmed TR:Q23094 protein_id:CAA95853.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF167   Uncharacterized ACR, YggU family COG1872        43.4    2.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF167     1/1      33   110 ..     1    82 []    43.4  2.3e-11

Alignments of top-scoring domains:
DUF167: domain 1 of 1, from 33 to 110: score 43.4, E = 2.3e-11
                   *->vkdgllinvkVqPkAkensIgnFsvnewrkalkVrIkaPPekGKANr
                       ++   + ++ +P+Ak+  +    v   + ++ V+I a P +G AN+
     W01A8.2    33    TEGRIGLHIHAKPGAKKSCV----VAIGDSEVDVAIGAAPREGAANE 75

                   eiiklLakiFslpKSdVeivsGelsRqKtilikni<-*
                   e+i++L  +++l K +    +G +sR+K++li
     W01A8.2    76 ELISYLMSALGLRKNELQFDKGAKSRSKVVLIDTK    110

[DB home][top]