hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W01D2.2a
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Query:  W01D2.2a  CE20124  locus:nhr-61 Zinc finger, C4 type (two domains) status:Confirmed SW:O62389 protein_id:CAB05636.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
zf-C4       Zinc finger, C4 type (two domains)          138.7    2.1e-40   1
hormone_rec Ligand-binding domain of nuclear hormone     45.2    5.4e-13   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
zf-C4         1/1      28   103 ..     1    77 []   138.7  2.1e-40
hormone_rec   1/1     209   396 ..     1   195 [.    45.2  5.4e-13

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 28 to 103: score 138.7, E = 2.1e-40
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRsiqknlviYsCkrnkdCv
                       +C+VCGD A G+HYGv +C+GCKGFFrRsi kn + Y C++ ++C
    W01D2.2a    28    LQCAVCGDVALGKHYGVNACNGCKGFFRRSIWKNRT-YACRHGGKCL 73

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   + K +Rn+C+ CRL +CL+VGM+  aV+ +
    W01D2.2a    74 VAKEQRNACRSCRLTRCLDVGMNPRAVQGD    103

hormone_rec: domain 1 of 1, from 209 to 396: score 45.2, E = 5.4e-13
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsyk
                       r+++l v+ +Ks++  ++   +D++++ k+ ++ + +  ++ +s k
    W01D2.2a   209    RRAFVLFVDILKSIDQLRDVQEDDKMKIAKSRFAAFYWWLCSTWSAK 255

                   ekkataDgsdtllfpdGtdidrdsl..............gsselirrife
                    ++      +++++++G++ + +  + ++++++++ + ++s+   +++ +
    W01D2.2a   256 AGC------NGVCYSNGSYHPASISdmpksegkhgvridYSGVSQKSLEN 299

                   lliklrvnvlaplieLkldeeEyalLkAIvLfnPsdvpgLsesarelvek
                   l+ +lr        +++l++eE +   ++v++    vp++s +  +++++
    W01D2.2a   300 LVEPLR--------RMELSDEERIVGAVMVILAD-PVPNVSTKTEKILAE 340

                   lqekylsaLlqycllnypdslssdgpsRFakLLlllpvlrslssdlkehl
                    ++ yl+ L + ++l        ++  R + + lll ++  l+++  ++
    W01D2.2a   341 ARDFYLELLGYCIKLPEE-----QQGIRVSTMVLLLASIMELVHLTTDN- 384

                   fflkrlfnlpkv<-*
                   ++l   +++ ++
    W01D2.2a   385 IQLSDVLHVIDL    396

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