hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W01G7.3
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Query:  W01G7.3  CE18986   RNA polymerases L \/ 13 to 16 Kd subunit status:Confirmed SW:Q9XVH6 protein_id:CAB03455.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
RNA_pol_L RNA polymerases L / 13 to 16 kDa subunit      142.0    3.2e-42   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
RNA_pol_L   1/1      15   107 ..     1   103 []   142.0  3.2e-42

Alignments of top-scoring domains:
RNA_pol_L: domain 1 of 1, from 15 to 107: score 142.0, E = 3.2e-42
                   *->ekikiLdpkdtEkdpnavelqiekEDHTLGNlLKyiLLkdpeVeFAg
                       k+  ++ kdt k+pna+ ++i kEDHTLGN LK +LLkdpeV+FAg
     W01G7.3    15    DKKFYIE-KDT-KVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59

                   YsvPHPLehPEtGRYiskikiRIqTtegtdalEaLkkAledlinlcdlle
                   Y+ PHPLeh        ki++RIqTt  t++ +aL+ A++dl  +++lle
     W01G7.3    60 YKNPHPLEH--------KILLRIQTTNNTTPADALTTAITDLVGELSLLE 101

                   dkFkek<-*
                    +   +
     W01G7.3   102 HRIDAA    107

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