Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02B12.10
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Query: W02B12.10 CE03770 status:Partially_confirmed TR:Q23126 protein_id:CAA91400.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Methyltransf_4 Putative methyltransferase 347.6 3.3e-112 1
heme_1 Heme/Steroid binding domain 6.3 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
heme_1 1/1 127 147 .. 57 78 .] 6.3 3
Methyltransf_4 1/1 49 251 .. 1 254 [] 347.6 3.3e-112
Alignments of top-scoring domains:
heme_1: domain 1 of 1, from 127 to 147: score 6.3, E = 3
*->aahreeaaeelleklykvGrvd<-*
a++r a++++++++++G++
W02B12.10 127 AVLR-SNAMKYMPNYFHKGQLS 147
Methyltransf_4: domain 1 of 1, from 49 to 251: score 347.6, E = 3.3e-112
*->wpengiairdypgfetlDwqalfgneqppylfsaekfksgpavlvlE
p+ ++ Dw +++g++++ g++v +++
W02B12.10 49 TPN------HM------DWTKYYGDYTK-----------GRQVDFAD 72
IGcGmGrflvamAkknPdklfiGiEirvpgvdkalkkiialr.ltAlkgg
IGcG+G++l+ +++k+Pd l+iG+Eirv+++d++++ki+alr+++A++g+
W02B12.10 73 IGCGYGGLLMRLSPKYPDNLMIGMEIRVKVSDYVNEKIQALRkHHAEAGH 122
lqNlrilcgdAekvlpnlfpdgsLqkifinFPDPWpKkRHhKRRllqpef
++N+++l+++A+k++pn+f++g+L+k+f++FPDP++K+++hK+R+++p++
W02B12.10 123 YRNVAVLRSNAMKYMPNYFHKGQLSKMFFLFPDPHFKNKKHKWRIITPTL 172
lkeyarvLkpGGvlhlaTDveeyfeemlevlsenfqfEvEikklaqhplf
l+eya+vL++GG ++++TDv++++e+m+++lse hplf
W02B12.10 173 LSEYAYVLREGGIIYTITDVKDLHEWMVKHLSE-------------HPLF 209
erihakvkklKkdiydlriestdlnesPisdelrpsTeyEqkvqrlggpi
er+ ++++++++Pi+++l sTe++qkv r++g++
W02B12.10 210 ERL----------------TEEEMKKDPIVEMLFESTEEGQKVTRNDGGK 243
feliFkkl<-*
+++iF++l
W02B12.10 244 WPAIFRRL 251