hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W02B12.6
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Query:  W02B12.6  CE28096  locus:ars-1 alanyl-tRNA synthetase status:Confirmed TR:Q23122 protein_id:CAA91396.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
tRNA-synt_2c tRNA synthetases class II (A)              726.7   1.1e-214   1
DUF440       Protein of unknown function, DUF440          8.1       0.63   1
TerD         Bacterial stress protein                     4.3        5.8   1
AstA         Arginine N-succinyltransferase beta subu     3.0        8.3   1
RTX          RTX N-terminal domain                        1.8        3.2   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
DUF440         1/1     159   170 ..    96   107 .]     8.1     0.63
TerD           1/1     227   246 ..     1    20 [.     4.3      5.8
RTX            1/1     536   545 ..   658   667 .]     1.8      3.2
AstA           1/1     687   695 ..   337   345 .]     3.0      8.3
tRNA-synt_2c   1/1      26   745 ..     1   780 []   726.7 1.1e-214

Alignments of top-scoring domains:
DUF440: domain 1 of 1, from 159 to 170: score 8.1, E = 0.63
                   *->eddkefHvlWKk<-*
                      ++d+e+  +WK+
    W02B12.6   159    PEDRECREIWKR    170

TerD: domain 1 of 1, from 227 to 246: score 4.3, E = 5.8
                   *->fifynnlrsedGaVqhsGDN<-*
                      ++f    r+++G+++h G N
    W02B12.6   227    IVFMSSVRDSCGQIRHLGKN    246

RTX: domain 1 of 1, from 536 to 545: score 1.8, E = 3.2
                   *->dtGaLTIDgt<-*
                      dtG L IDg+
    W02B12.6   536    DTGHLLIDGR    545

AstA: domain 1 of 1, from 687 to 695: score 3.0, E = 8.3
                   *->GdsVRlVal<-*
                      G+sVR+Val
    W02B12.6   687    GASVRVVAL    695

tRNA-synt_2c: domain 1 of 1, from 26 to 745: score 726.7, E = 1.1e-214
                   *->EIRqtFLdFFekkGHtvvpSsplvPrRnDPtLLFtNAGMnqFKpiFl
                      E R+ F +FF++k+H++++Ss+++P  nD tLLFtNAGMnqFKp +l
    W02B12.6    26    ELRKSFYEFFKSKNHEILRSSSVIPDENDGTLLFTNAGMNQFKPLIL 72

                   GgedPnsDkppynRAtnsQkCIRaGGKHNDLENVGkTaRHHTFFEMLGNF
                   +         +++R++n QkCIRaGGKHNDL++VGk+  H+TFFEM+GN+
    W02B12.6    73 SST-------ESRRVANIQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNW 115

                   SFGyedkeDYF.KeEAIefAWELLTSkvlgLpperLyvTVyedDdkaGLe
                   SF+     D F+KeEA+ +AWE+L+ + lg+ ++rLyv+++++ +k+GL+
    W02B12.6   116 SFN-----DAFsKEEACRYAWEYLV-EILGINADRLYVSYFGGIEKLGLP 159

                   PdgEAyeiWekivGipeeRIlrfgdkDNFWemGdtaiGkGPCGPCSEIfY
                    d E++eiW+ i+ + ++RIl+f    NFWemG      GPCGPC+EI+Y
    W02B12.6   160 EDRECREIWKRIG-VSSNRILPF-VAENFWEMGAA----GPCGPCTEIHY 203

                   DRGeeiggrpagspveFgDadddrflEIWNLVFmQfNReskeDdGtlkpL
                   DR   iggr+a  +v+     dd ++EIWN+VFm   R+s    G  + L
    W02B12.6   204 DR---IGGRDASRLVN----IDDSVVEIWNIVFMSSVRDS---CGQIRHL 243

                   PkksiDTGMGLERlvaVLQnvrsNYDtDlFrplIeaieeisgvRYDpYsG
                    k++iDTGMG+ERl +V Qn++sN+DtD+F p+ e++ e++++    Y+
    W02B12.6   244 GKNHIDTGMGFERLLSVVQNKTSNFDTDVFTPILEKTSELAKK---QYT- 289

                   kvGdedkdetdvayRVIADHvRaltFaIADGvlPsNeGRGYVLRRILRRA
                     G  d    d+ +R +ADH+Ra t aI+DG++P+ +G G ++R+++RRA
    W02B12.6   290 --GSLDSRQ-DATFRLVADHIRAATVAISDGAVPDGTGCGFIVRKMMRRA 336

                   vRhgrkkLGlkepNFlykLVptvvevmgdaYPELkekedfieeilelEEe
                      g  kLG+++   +++LVp+v++ m+++YPE+    ++i +i + EE+
    W02B12.6   337 FLQGISKLGIERY-AMSELVPVVASTMKEVYPEIHDTSTHIRKIFNDEEA 385

                   rFlkTLerGlrLleelikslkkkGsktLsGedaFkLYDTYGFPvDLTqei
                   +F kT+++  ++++ +++ +k   s ++sG +aF L +T+G+P+  T+e+
    W02B12.6   386 QFWKTVDKAKKMFDSVAAESK---SPIISGRKAFNLFETHGLPLAVTVEL 432

                   AeerGltVDmegFekameeqrerskaavkgkgedlieldvsalkeldatg
                   A++ G +VD++ Fe ++ e+++ s +a+++k          +  +++
    W02B12.6   433 ARNIGREVDETEFERCRLEAQKVSQKASQFKL-------PISADDFPSH- 474

                   vpgTteFlgYdtlsd.da.ykfeeaeakilalfkdgefveevlagqeggv
                       ++  +Y+++  + ++y f +  ++il ++kd++  e+++a++ g++
    W02B12.6   475 ----SDKEKYSYV-FrNGkYEFPQVKTRILQVYKDQQKAESLEANDRGFL 519

                   vLDrTpFYAEsGGQigDtGylvyIngeggefrVedvqkygggvv.vHigk
                   vL++  FY+E+GGQ  DtG + +I+g    f+Ve+++k++gg v+v +g+
    W02B12.6   520 VLEECQFYGEQGGQTSDTG-HLLIDGRE-VFEVENAKKIAGGAVtVLFGR 567

                   veeGslkvGdtVtavvDekrRrlimrNHTATHLLhaALrkVLGdHVdQaG
                    +   +     V  + De rR ++mr H+ATHLL+ AL+k LG +  Q+G
    W02B12.6   568 AL-LPIRRDLRVEQKLDETRREGVMRAHSATHLLNWALQK-LGVGSGQKG 615

                   SLVapdrLRFDFsHp.kaitpEELkkI....EdlvNeiIranlpVttrem
                   S V+ dr RFD s  ++ +++E+ ++   + E+  +e I++    +++e+
    W02B12.6   616 SSVDCDRFRFDYSTGdEDLSKEQRTELlikcEMKMREFIQNGGFTEIIET 665

                   pldeAkkkkGarAlFGEk....YpGHdeVRVVsvGdpveelLanPnpews
                    l+eAkk+ ++   + ++++++ +G   VRVV  G             +
    W02B12.6   666 SLEEAKKIENL---QSDVkedrIGG-ASVRVVALGS------------GA 699

                   lfSvELCGGTHVrnTGdIGlfkIlsEegIaaGVRRIEAvTGeeAie<-*
                    + vE C GTH++    I ++ I s  + +   RRI+  TG+eA +
    W02B12.6   700 DVPVECCSGTHIHDVRVIDDVAIMSDKSMGQRLRRIIVLTGKEAAA    745

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