Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02B12.8
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Query: W02B12.8 CE03768 GTPase-activating (rhoGAP) like protein status:Partially_confirmed TR:Q23130 protein_id:CAA91403.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RhoGAP RhoGAP domain 132.9 2.7e-36 1
PdxA Pyridoxal phosphate biosynthetic protein Pdx 4.7 2.5 1
GcpE GcpE protein 2.0 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PdxA 1/1 188 243 .. 1 60 [. 4.7 2.5
GcpE 1/1 265 283 .. 579 597 .] 2.0 2.9
RhoGAP 1/1 263 421 .. 1 170 [] 132.9 2.7e-36
Alignments of top-scoring domains:
PdxA: domain 1 of 1, from 188 to 243: score 4.7, E = 2.5
*->lLaakegalrekctlVviaDealLeraakllglpl..dlrdiepvee
+ + ++ k+++V ++ ++Le+a++++ l l++++rd+++ +
W02B12.8 188 I--SSK--FENKFHYVMCI--DELENALSVARLNLpsPIRDHDKSFS 228
aqeesagllvidplp<-*
q +++++++++plp
W02B12.8 229 TQSNRPETPPAQPLP 243
GcpE: domain 1 of 1, from 265 to 283: score 2.0, E = 2.9
*->lvEeLielieklakekepe<-*
+v++Lie++e +a +e+
W02B12.8 265 IVDQLIEYLEAHALTMEGV 283
RhoGAP: domain 1 of 1, from 263 to 421: score 132.9, E = 2.7e-36
*->PiivekcveyIeklYPLaerGlqeEGIYRvsGsasrvkeLreafdkd
P+iv++++ey+e+ ++l EG +R+s+++ ++k+L+++++k+
W02B12.8 263 PPIVDQLIEYLEA------HALTMEGVFRKSANIGSIKRLQDRINKG 303
gapdslelseke..wfDvhvvag.....lLKlYLReLPePLipydlyeef
++ ++e ++++ D va+ + + lLK ++R+L ePL ++ ly+++
W02B12.8 304 ----EKIDFENDpeYKDNEYVASlhasvLLKTFFRSLGEPLTTNRLYPKL 349
iraakeqiedpderlralkellsSkLPrahynTLryLltHLnrvaeiyie
+++ +e+ a+ke + +LPr++y +L+ +++L rvae
W02B12.8 350 AALSE---VSKTEKSAAVKEFVK-LLPRENYILLKTVIKFLTRVAE---- 391
nsavNkMnarNLAivFgPtLlrppdkesnd<-*
ns+vN M+a+NL++vFgP+L +p d e +
W02B12.8 392 NSKVNLMTANNLSVVFGPNLTWPTDQEVPI 421