Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02D3.2
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Query: W02D3.2 CE14420 dihydroorotate dehydrogenase status:Partially_confirmed TR:O01815 protein_id:AAK21481.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DHOdehase Dihydroorotate dehydrogenase 450.1 1.8e-131 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DHOdehase 1/1 89 390 .. 1 328 [] 450.1 1.8e-131
Alignments of top-scoring domains:
DHOdehase: domain 1 of 1, from 89 to 390: score 450.1, E = 1.8e-131
*->mLavkvaGlkFkNPiglAAGfdKnGeaidgllaLGkFGfieiGsvTp
L+ +++G++FkNPiglAAGfdK+G+ai +l ++++FG ieiGsvTp
W02D3.2 89 ELKCELFGREFKNPIGLAAGFDKDGQAITQLAKNSGFGLIEIGSVTP 135
ePQeGNPkPRvfRlpegkAvINrmGfNNpGiDavlerllk....rrkeyf
PQ+GN +PRvfRl e+++vINr+GfN++G+ v +r++ ++++++e +
W02D3.2 136 IPQPGNNRPRVFRLLEDEGVINRYGFNSDGVGRVHQRVRSardsWVPESY 185
rdkdaspaedvkpakvPLlkkdlGInlgknKdtPledavdDYvavarkig
+ G+nlgknK t eda+ DY +++ ++
W02D3.2 186 A--------------------YFGVNLGKNKLT--EDAKLDYEIGVNYFA 213
dapyAdyleiNiSSPNTphGLralQtdpeLrelLtkvvkarseLqkmttk
p dyl++N+SSPNTp GLr++Q++ +L +lL v +a + k +k
W02D3.2 214 --PHCDYLVLNVSSPNTP-GLRSMQKKSDLEKLLAYVHQALE-MHK-LEK 258
kvPvlVKlaPDltdeelidIAdvalg.edgLdGiiatNTTvsrmridlkt
++ v++K+aPDl ++el+dIA v++++++ +dGii++NTT+ r+ + l++
W02D3.2 259 QPQVFLKIAPDLIESELKDIAQVVTNkKFAIDGIIVSNTTIARP-DYLRS 307
rkpilangtGGLSGkplkpiatevirrlyqrtkgrIPIIGvGGIsSgeDA
++ ++ tGGLSG+p++ i+te +r +y++t+g+IPIIG+GG++Sg DA
W02D3.2 308 -ENKTE--TGGLSGAPVREISTECVRKIYKLTNGQIPIIGCGGVFSGADA 354
lEkieAGAslvQiYTgliyeGPkivkkIidelpelL<-*
+Eki+AGAslvQ+Y++++yeG +++ kI++el elL
W02D3.2 355 YEKIRAGASLVQLYSAFVYEGFPVIGKIKRELVELL 390