Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02G9.2
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Query: W02G9.2 CE18315 status:Partially_confirmed TR:O61899 protein_id:AAC17684.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Kelch Kelch motif 315.3 7.1e-91 6
BTB BTB/POZ domain 106.1 6.8e-28 1
UPF0148 Uncharacterised protein family (UPF01 4.0 6.6 1
DUF604 Protein of unknown function, DUF604 3.5 5.3 1
CTV_P23 Citrus tristeza virus (CTV) P23 prote 2.3 9.1 1
DNA_pol_viral_C DNA polymerase (viral) C-terminal dom 2.2 2.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_pol_viral_C 1/1 61 79 .. 1 19 [. 2.2 2.7
UPF0148 1/1 190 215 .. 115 140 .] 4.0 6.6
CTV_P23 1/1 217 232 .. 194 209 .] 2.3 9.1
BTB 1/1 205 297 .. 1 122 [. 106.1 6.8e-28
DUF604 1/1 309 322 .. 267 283 .] 3.5 5.3
Kelch 1/6 525 563 .. 9 45 .] 37.0 5.8e-09
Kelch 2/6 565 610 .. 1 45 [] 49.4 1.7e-12
Kelch 3/6 612 657 .. 1 45 [] 57.2 9.5e-15
Kelch 4/6 659 704 .. 1 45 [] 52.5 2.2e-13
Kelch 5/6 706 751 .. 1 45 [] 60.6 1e-15
Kelch 6/6 753 798 .. 1 45 [] 65.3 4.5e-17
Alignments of top-scoring domains:
DNA_pol_viral_C: domain 1 of 1, from 61 to 79: score 2.2, E = 2.7
*->gskgvlpqekrvkklktvl<-*
g+ +v+ q k v+kl +++
W02G9.2 61 GQNHVKNQKKNVQKLDHYF 79
UPF0148: domain 1 of 1, from 190 to 215: score 4.0, E = 6.6
*->lkeEdaetaEkilaiieelrsleglr<-*
++ E e ++ki + +++lr++e+l
W02G9.2 190 MEYENQEQSSKIMEQMRILRQTEELC 215
CTV_P23: domain 1 of 1, from 217 to 232: score 2.3, E = 9.1
*->vsLsvsGGvLREHHfi<-*
v L v+G v+R H +i
W02G9.2 217 VELLVAGSVIRAHRYI 232
BTB: domain 1 of 1, from 205 to 297: score 106.1, E = 6.8e-28
*->lnelrengelcDVtlvvgdgegknevtSgkefkAHKavLaAcSpYFk
+ lr+++elcDV l+v g ++AH+ +LaA+SpYFk
W02G9.2 205 MRILRQTEELCDVELLVA----------GSVIRAHRYILAAASPYFK 241
alFtgnfkestteeessviseielddvspedfealLefiYtgelsitqeq
a+Ft++ + e+++ +iel+d+ e++++++++iYt+++ it
W02G9.2 242 AMFTNG------MVEMKKL-TIELQDIPEESVRIIVDYIYTDKIAIT--- 281
ksPssckseenveelLelAadklqi<-*
nv +l+ +A lq+
W02G9.2 282 --------MNNVHQLIFTA-TVLQV 297
DUF604: domain 1 of 1, from 309 to 322: score 3.5, E = 5.3
*->rWnfiCkvvaPRRqccr<-*
+W+ + +PRRq c+
W02G9.2 309 LWK---MYDSPRRQGCF 322
Kelch: domain 1 of 6, from 525 to 563: score 37.0, E = 5.8e-09
*->vlggkiYviGGydg..qslnsvevYDpetntWeklpsmp<-*
++ g i+++GG+ + +++sve+YD + n+W ++p+m+
W02G9.2 525 SVAGAIFCAGGRGKagGPFSSVEAYDWRRNQWIEVPDMM 563
Kelch: domain 2 of 6, from 565 to 610: score 49.4, E = 1.7e-12
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
R+++gvv+ +g +Y+iGG+dg+ l ++e++ p+ +W++++sm+
W02G9.2 565 QRRHVGVVSANGNLYAIGGHDGtAHLATAEAFQPSIRQWKRIASMK 610
-*
W02G9.2 - -
Kelch: domain 3 of 6, from 612 to 657: score 57.2, E = 9.5e-15
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+R+g +v+++++ iY++GG d++++ ++ve+YD e+++W+ +++m
W02G9.2 612 ARRGIAVASIENVIYAVGGLDDtTCYKTVERYDIEEDEWSTVADMD 657
-*
W02G9.2 - -
Kelch: domain 4 of 6, from 659 to 704: score 52.5, E = 2.2e-13
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
R g+gv+v+g ++++iGG dg++sl ++e++Dp+ ++W++++sm+
W02G9.2 659 QRGGVGVAVIGRYLFAIGGNDGtSSLETCERFDPMIDKWKRIASMK 704
-*
W02G9.2 - -
Kelch: domain 5 of 6, from 706 to 751: score 60.6, E = 1e-15
*->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
+R+g gv+vl+g++Y+iGG+d++ +l ++e+YDp+ ++W l m+
W02G9.2 706 RRAGSGVCVLDGYLYAIGGFDDnAPLETCERYDPDADKWITLDKMS 751
-*
W02G9.2 - -
[output cut off at A = 10 top alignments]