Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W02H5.8
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Query: W02H5.8 CE21240 status:Partially_confirmed TR:Q9N5C4 protein_id:AAF60376.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Dak1 Dak1 domain 337.6 1.4e-97 1
Dak2 DAK2 domain 129.2 6.9e-37 1
Mrr_cat Restriction endonuclease 5.0 3.7 1
Histone_HNS H-NS histone family 5.0 6.3 1
arrestin Arrestin (or S-antigen), N-terminal domai 4.3 9.7 1
Phage_X Phage X family 3.8 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
arrestin 1/1 28 44 .. 133 152 .] 4.3 9.7
Histone_HNS 1/1 161 172 .. 119 130 .] 5.0 6.3
Phage_X 1/1 296 329 .. 43 93 .. 3.8 8.7
Dak1 1/1 11 333 .. 1 367 [] 337.6 1.4e-97
Mrr_cat 1/1 449 473 .. 95 122 .] 5.0 3.7
Dak2 1/1 392 572 .. 1 191 [] 129.2 6.9e-37
Alignments of top-scoring domains:
arrestin: domain 1 of 1, from 28 to 44: score 4.3, E = 9.7
*->kkhkarskvftVirkldlns<-*
k hk ++++V+ dln+
W02H5.8 28 KFHK---SCRRVVHITDLNP 44
Histone_HNS: domain 1 of 1, from 161 to 172: score 5.0, E = 6.3
*->IkkALneeGKSL<-*
I+ A++ eGKSL
W02H5.8 161 IAGAMAWEGKSL 172
Phage_X: domain 1 of 1, from 296 to 329: score 3.8, E = 8.7
*->yrkaLkeviGIDIAqlrnVprstpsvnvvPLirvLeadfvievkpaq
y+++L + +G++ ++l r ++s + + L+a pa+
W02H5.8 296 YMTSLDG-HGVSVTIL----RADDS-----MLQYLDA-------PAA 325
iPdW<-*
+P W
W02H5.8 326 APGW 329
Dak1: domain 1 of 1, from 11 to 333: score 337.6, E = 1.4e-97
*->dvvdeaLkGlakaNpsyLtliee.ervViradsasgnadKVAliSGG
vd+aL Gl +N + ++++ rvV +d+ ++ V+li GG
W02H5.8 11 EAVDDALFGLVSSNSN-VKFHKScRRVVHITDL--NPSHHVSLIAGG 54
GSGHEPaHaGFVGkGmLdAAvcGdiFASPStkqIlsaIkAVegekGtLLI
GSGHEP aG+VGkG+L+AA++G++FASP ++ + +a+ A ge+G L
W02H5.8 55 GSGHEPYAAGYVGKGLLTAAIAGNVFASPPSRNVQAALEATRGEAGAILF 104
VKNYTGDiLHFGLAAErAkaeGikvElviVgDDVSVgrkkgglVGRRGLA
V NYTGD+L+FGLAAEr a+G +++v ++DDV+ + + +VGRRGLA
W02H5.8 105 VINYTGDRLNFGLAAERFNASGGTARVVTIADDVAIDSPNS-KVGRRGLA 153
GTvLVHKIaGAaAerGssklpLaeVarvAkravdnlvtIGasLdhCtvPG
G vL KIaGA A +G +L+e+++ +++v+ +t+G+sL +PG
W02H5.8 154 GAVLTIKIAGAMAWEG---KSLDEIYETSQKVVSSMGTLGVSLYTGSLPG 200
rkheaeedDdeeeqkdvLkedemElGMGIHnEPGikrsspiPSiDelVse
e+e L++d++E+G+GIH+EPG +r+ + + + V
W02H5.8 201 KNRETE-----------LPDDQIEVGLGIHGEPGKFRAQFGS-ANRIVHS 238
YmLkkLLdeldkdRayRFWDYqqGsWqEEqqtKVkfdsgdrVVLLiNNLG
+L++L ++ + R g+ V+L+NNLG
W02H5.8 239 -LLDTLRSKMEM-RE-----------------------GEKFVVLVNNLG 263
GtSnlELyaItnkvveqLalkygItpvrtitGafvTSLDgpGFSITLlna
++S lE+ ++ ++v ++++I + r ++G ++TSLDg G S T l+a
W02H5.8 264 SVSQLEMNIVNGEVLRYF-EDHKIGITRFFSGIYMTSLDGHGVSVTILRA 312
dkateklldapvdtptwpkga<-*
d++ + ldap+ +p w + +
W02H5.8 313 DDSMLQYLDAPAAAPGWIPAL 333
Mrr_cat: domain 1 of 1, from 449 to 473: score 5.0, E = 3.7
*->FtsaArelAeaaiqnrgieLiDreeLie<-*
F+saA+++A++++ rg + iDr+ + e
W02H5.8 449 FSSAAQSFAQRSQ--RGEK-IDRTSILE 473
Dak2: domain 1 of 1, from 392 to 572: score 129.2, E = 6.9e-37
*->vfpGDGDcTGttmarGaeailealkeekldlddlaevlkaiadglld
+++GDGDc G+t+a +aeai++ l + ++lk+++ + +
W02H5.8 392 AYAGDGDC-GSTFAGAAEAIRKQT--SGLNYTHPETLLKQLSIIFEQ 435
gmGGtSGvLySiflrgfAqalkdrges..eltaatlakAlkaaaldAlkk
+GGtSG+Ly++ ++++Aq+ +r + ++ ++ + +Al+ a A++k
W02H5.8 436 TVGGTSGALYALMFSSAAQSFAQRSQRgeKIDRTSILEALD-KANRAVQK 484
ygkAveGdrLTmiDaLapfveaLvealakgkdlaea.ldaaakaAeagae
yg+A+ Gdr Tm+D L+ ve+L++ ++ ++ ++a ++aa+ka e++a+
W02H5.8 485 YGGARVGDR-TMVDGLDAMVEELRKGFSGNEESLDAiFEAAVKASEKAAK 533
sTCrkmlAktGRasYvleeslkkldSelGvpDpGAvGlaaileglle<-*
+T ++ A +GRasY ++e+ pD+GA++ +l++
W02H5.8 534 AT-ASQTATVGRASYTSSEA-------QTKPDAGATAISLWLRACWT 572