hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W03C9.3
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Query:  W03C9.3  CE03777  locus:rab-7 ras related protein status:Confirmed TR:Q23146 protein_id:CAA91357.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ras      Ras family                                     313.7    4.3e-92   1
DUF258   Protein of unknown function, DUF258              3.5        5.6   1
ABC_tran ABC transporter                                  3.3        8.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC_tran   1/1      11    27 ..     3    19 ..     3.3      8.5
DUF258     1/1      13    27 ..    32    46 ..     3.5      5.6
ras        1/1      11   209 .]     1   198 []   313.7  4.3e-92

Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 11 to 27: score 3.3, E = 8.5
                   *->vlalvGpNGaGKSTLLk<-*
                      ++ ++G +G GK++L++
     W03C9.3    11    KVIILGDSGVGKTSLMN    27

DUF258: domain 1 of 1, from 13 to 27: score 3.5, E = 5.6
                   *->vfaGqSGVGKSSLiN<-*
                      +++G SGVGK SL N
     W03C9.3    13    IILGDSGVGKTSLMN    27

ras: domain 1 of 1, from 11 to 209: score 313.7, E = 4.3e-92
                   *->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevDGkt
                      K++++GDsGVGK+sL++++++ +F+++Y++TIG+DF+t++v++D++t
     W03C9.3    11    KVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVNIDDRT 57

                   vkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   v+LqIWDTAGQERF++l  a+YRgA++++L +D+T+++SF+ + +W++e+
     W03C9.3    58 VTLQIWDTAGQERFQSLGVAFYRGADCCVLAFDVTNAASFKSLDSWRDEF 107

                   lrhad...kdenvpivLVGNKcDLeddedleltegqkRvVsteeGealAk
                   l +a+++++d+ +p+vL+GNK+DLe           +R+Vs ++++ +++
     W03C9.3   108 LIQASprdPDH-FPFVLLGNKVDLES----------QRAVSSKRAQSWCQ 146

                   elgAlpFmETSAKtntNVeeaFeelareilkkvse...........vnvn
                    +g++p++E SAK++ NVe aF+++ar++l+++s+++++ ++ ++++ +n
     W03C9.3   147 TKGNIPYYEVSAKEALNVEAAFLAIARDALARESQetndfpefpdqIRLN 196

                   ldqpakkkkskCcil<-*
                   ++q+++++ s+C+ +
     W03C9.3   197 PNQQNQQN-SGCN-C    209

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