Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W03F11.1
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Query: W03F11.1 CE14542 status:Confirmed TR:O01780 protein_id:AAK18984.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CBM_14 Chitin binding Peritrophin-A domain 50.3 1.3e-14 3
PT PT repeat 13.8 0.022 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CBM_14 1/3 21 61 .. 1 49 [. 16.0 0.001
CBM_14 2/3 103 132 .. 23 50 .. 0.4 90
CBM_14 3/3 156 208 .. 1 58 [] 46.4 2.1e-13
PT 1/1 212 232 .. 1 21 [. 13.8 0.022
Alignments of top-scoring domains:
CBM_14: domain 1 of 3, from 21 to 61: score 16.0, E = 0.001
*->CpgrdndeppdGlypdgdCSskYyiCsnGqavlftCPnGlyFnpetq
C++ + ++d S+k++ C +G++++ tC +++++++t+
W03F11.1 21 CNEG-----DQDAHFD---SNKFWKCEGGRWIVVTCQINYFYDATTG 59
tC<-*
C
W03F11.1 60 FC 61
CBM_14: domain 2 of 3, from 103 to 132: score 0.4, E = 90
*->YyiCs.nGqav.lftCPnGlyFnpetqtCd<-*
++ Cs++G + ++C ++ +F ++ ++C+
W03F11.1 103 FLECStDGTEYiKRYCQPDAVFVQRENMCV 132
CBM_14: domain 3 of 3, from 156 to 208: score 46.4, E = 2.1e-13
*->CpgrdndeppdGlypd.gdCSskYyiCsnGqavlftCPnGlyFnpet
C++ ++ +dG+ pd ++C ++y+C++G ++ ++C++G+++++ +
W03F11.1 156 CKESAG---HDGYKPDvYNC-KNFYQCASGLWTQRSCGEGTIWDQHK 198
qtCdypdnvvdC<-*
tCd+ + +C
W03F11.1 199 LTCDHNRG--QC 208
PT: domain 1 of 1, from 212 to 232: score 13.8, E = 0.022
*->qPTaqPTaqPTvqPTgqPtaq<-*
+PT+qPT qPT PT+ P+++
W03F11.1 212 SPTVQPTYQPTWRPTAYPPNE 232