hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W03G1.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  W03G1.6  CE17284   protein kinase status:Partially_confirmed TR:Q9UAY1 protein_id:AAD14754.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
pkinase     Protein kinase domain                       323.1    3.1e-93   1
KA1         Kinase associated domain 1                   35.3    3.1e-08   1
K1          K1 glycoprotein                               4.7        6.3   1
Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit        4.0        9.7   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Glu-tRNAGln   1/1     104   123 ..     1    20 [.     4.0      9.7
pkinase       1/1      11   265 ..     1   294 []   323.1  3.1e-93
K1            1/1     262   276 ..   116   130 .]     4.7      6.3
KA1           1/1     686   725 ..    11    50 .]    35.3  3.1e-08

Alignments of top-scoring domains:
Glu-tRNAGln: domain 1 of 1, from 104 to 123: score 4.0, E = 9.7
                   *->LteeevekFvtqLstIiafv<-*
                      L+e e+++F  qL + iafv
     W03G1.6   104    LEESEARHFFRQLVSAIAFV    123

pkinase: domain 1 of 1, from 11 to 265: score 323.1, E = 3.1e-93
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek..rf
                      y ++ +lG+G+fGkV++a+h+  t+++VA+Ki++  k+++ +  +r+
     W03G1.6    11    YAVHDELGSGGFGKVRLATHL-LTNQKVAIKIID--KKQLGHDlpRV 54

                   lrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrngg
                   ++E+  l++LsH NI+rl+++ e t+d++ +vmEy+ gG++fdy++r+
     W03G1.6    55 QTEMDALRNLSHQNICRLYHYIE-TEDKFFIVMEYCSGGEMFDYIVRKE- 102

                   plsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaDF
                   +l+e ea+++++Q+++++++ Hs+g  HRDLKpeN+Ll+e+  ++K++DF
     W03G1.6   103 RLEESEARHFFRQLVSAIAFVHSQGYAHRDLKPENLLLTED-LHLKLIDF 151

                   GLArlle....sssklttfvGTpwYmmAPEvileg.rgysskvDvWSlGv
                   GL+++ e+++ + ++l+t +G+p Y  APE+ ++g ++ + ++DvWS+G+
     W03G1.6   152 GLCAKTEkgriDKHNLDTCCGSPAYA-APEL-IQGlQYKGNEADVWSMGI 199

                   iLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridpl
                   +Ly ll g                           lPf+d       d++
     W03G1.6   200 LLYTLLVG--------------------------ALPFED-------DNM 216

                   eelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeiln
                   + +++ i+   + +  p+ +S+  k+Ll+ +L++ P++R+   + k +l+
     W03G1.6   217 QIMYKKIQS--GCFYEPEFLSPLSKQLLRAMLQVVPERRI---SVKKLLE 261

                   hpwf<-*
                   h w+
     W03G1.6   262 HDWL    265

K1: domain 1 of 1, from 262 to 276: score 4.7, E = 6.3
                   *->hdfitEdYtqPvDWY<-*
                      hd     YtqPv W
     W03G1.6   262    HDWLNHKYTQPVKWN    276

KA1: domain 1 of 1, from 686 to 725: score 35.3, E = 3.1e-08
                   *->EiqlyKlprldlyGvdfQRisGpqwlFkdLcsailneLkv<-*
                      E++++ l+  d++G++++R++G+++ +k  c++il+  k+
     W03G1.6   686    ELEIVRLQMFDKVGIRRKRLKGDAFMYKKVCEKILQMAKI    725

[DB home][top]