Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/W04E12.6
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Query: W04E12.6 CE19001 Lectin C-type domain short and long forms (2 domains) status:Confirmed TR:Q9XUL6 protein_id:CAB04910.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 161.9 1.1e-44 2
wnt wnt family 1.1 5.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
lectin_c 1/2 39 148 .. 1 125 [] 81.0 2.5e-20
wnt 1/1 304 315 .. 341 352 .] 1.1 5.2
lectin_c 2/2 200 316 .. 1 125 [] 88.9 1e-22
Alignments of top-scoring domains:
lectin_c: domain 1 of 2, from 39 to 148: score 81.0, E = 2.5e-20
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk....
+ + Ae+ C +ggh L+s+q+ E+ a+l+s + ++ ++
W04E12.6 39 APAQFSFAEQQCNLLGGH--LASVQNGQEN----ALLQSNAANsfkr 79
.sntyaWIGLtdintegtwvwegwetdgspvnyt.enWapgePnnrgnhG
++++++WIG td t+gtw+w ++ +v+++ nW geP+
W04E12.6 80 sNYSDYWIGATDLETSGTWKW-----TDPSVTFDySNWQLGEPQS----- 119
gnEdCveiytdtdflaGkWnDepCdsklpyvCef<-*
+ dC+ i+++ d G W + C s++pyvC +
W04E12.6 120 -GSDCA-IQDKGD---GTWSAIGCTSYRPYVCVT 148
wnt: domain 1 of 1, from 304 to 315: score 1.1, E = 5.2
*->eCtevvevhtCK<-*
eC+ev ++CK
W04E12.6 304 ECNEVMRAYICK 315
lectin_c: domain 2 of 2, from 200 to 316: score 88.9, E = 1e-22
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk....
+++Ae+ C +ggh L+sI+s E+ f++++++ + ++
W04E12.6 200 HGEKFNDAEASCVLLGGH--LASIHSLTEN----TFVNNIASCgike 240
..sntyaWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhG
+++ + aWIG++ ++ +wvw tdg+p +y nWap +P+n +
W04E12.6 241 gkYEHLAWIGMR--KVGQDWVW----TDGTPSDYF-NWAPKQPDNPK--- 280
gnEdCveiytdtdflaGk..WnDepCdskl.pyvCef<-*
+E Cv+ +d + + + ++Wn+ C++ +++y+C++
W04E12.6 281 -KELCVQTAPDLSHDKWYenWNNLECNEVMrAYICKK 316