Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/W05E10.3
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Query:  W05E10.3  CE29364  locus:ceh-32 homeobox protein (so subfamily) status:Confirmed SW:Q23175 protein_id:CAB01249.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
homeobox Homeobox domain                                 43.9    3.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
homeobox   1/1     204   242 ..    19    57 .]    43.9  3.1e-09

Alignments of top-scoring domains:
homeobox: domain 1 of 1, from 204 to 242: score 43.9, E = 3.1e-09
                   *->FqknpYPsreeReeLAkkLgLterqVkvWFQNRRaKwKk<-*
                      + k+pYP++++++eLA+ +gLt  qV +WF NRR++ +
    W05E10.3   204    YLKDPYPNPPKKKELANATGLTQMQVGNWFKNRRQRDRA    242



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