Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W07A8.3
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Query: W07A8.3 CE27221 locus:dnj-25 status:Confirmed TR:O62397 protein_id:CAB04929.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DnaJ DnaJ domain 36.8 2.1e-08 1
CG-1 CG-1 domain 3.1 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CG-1 1/1 676 693 .. 1 18 [. 3.1 7.3
DnaJ 1/1 734 775 .. 13 64 .. 36.8 2.1e-08
Alignments of top-scoring domains:
CG-1: domain 1 of 1, from 676 to 693: score 3.1, E = 7.3
*->iqtlLpeaksRWLrpeEi<-*
i +L+ ++s+ L+peEi
W07A8.3 676 IGNMLKVEQSKNLTPEEI 693
DnaJ: domain 1 of 1, from 734 to 775: score 36.8, E = 2.1e-08
*->sdeeIKKAYRkLAlkyHPDKNpgdpe.erktleraeskeeAeekFke
++++IKK YRk +l +HPDK g+p+ + A+ +F e
W07A8.3 734 TPDQIKKHYRKACLVVHPDKLTGSPHlS-----------LAKMAFTE 769
IneAYe<-*
+n AY+
W07A8.3 770 LNDAYS 775