Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09C3.6
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Query: W09C3.6 CE14754 serine\/threonine protein phosphatase PP1 status:Partially_confirmed TR:O02658 protein_id:AAC24414.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 153.4 3.8e-42 1
DNA_primase_lrg Eukaryotic-type DNA primase, large su 1.9 8.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Metallophos 1/1 55 251 .. 1 124 [] 153.4 3.8e-42
DNA_primase_lrg 1/1 233 267 .. 187 221 .. 1.9 8.1
Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 55 to 251: score 153.4, E = 3.8e-42
*->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
+i+v+gD+Hg++ dll+++++++ +++ ++lflGD+vdrg++ +e+
W09C3.6 55 PPIIVCGDIHGQYSDLLRIFDKNgFpPDVNFLFLGDYVDRGRQNIET 101
llllfalklkapgpvylvrGNHDfdsgnsvy...............welf
++l++++k+k+p +++++rGNH+++ +n+vy+++ + +++ w f
W09C3.6 102 ICLMLCFKIKYPENFFMLRGNHECPAINRVYgfyeecnrrykstrlWSIF 151
leef.lllla.lvdgkillvHgglspd.......................
++ f++++l++l++ +il++Hgglsp+ + + +++ ++++++ +
W09C3.6 152 QDTFnWMPLCgLIGSRILCMHGGLSPHlqtldqlrqlprpqdppnpsigi 201
.............................leellk.ngvdlvirGHtH.p
+ + +++ + +++ + ++ + + + +++ + ++++dlv+r+H+ +
W09C3.6 202 dllwadpdqwvkgwqantrgvsyvfgqdvVADVCSrLDIDLVARAHQVvQ 251
<-*
W09C3.6 - -
DNA_primase_lrg: domain 1 of 1, from 233 to 267: score 1.9, E = 8.1
*->kvpfrvvidlvrlrnvflrdGfayvpkddlvsilr<-*
+v +r++idlv + + ++dG+ ++ +++v+i++
W09C3.6 233 DVCSRLDIDLVARAHQVVQDGYEFFASKKMVTIFS 267