Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09C3.1
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Query: W09C3.1 CE14744 serine\/threonine protein kinase status:Partially_confirmed TR:P91534 protein_id:AAC24410.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 57.4 8.1e-15 1
glutaredoxin Glutaredoxin 7.6 0.84 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 23 215 .. 1 187 [. 57.4 8.1e-15
glutaredoxin 1/1 308 345 .. 19 63 .. 7.6 0.84
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 23 to 215: score 57.4, E = 8.1e-15
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+ ++++lG+G+fG+Vy++ +k +t+++ A+Ki k ++ + +
W09C3.1 23 WLTIRELGRGAFGTVYHVSNK-STKQEAALKIEKMTAGDNL---LKF 65
EiqilkrLsHpNIvrligvfed..tddhlylvmEymegGdLfdy..lrrn
E +i+ ++H+ + i+++ d+ +d+ y+vm +++ dL ++ +l++n
W09C3.1 66 EREIMVAMQHE--PTAIHIYDDgiYKDYRYIVMTLCGP-DLQKIaeLMNN 112
ggplsekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtvK
+ ++ + +++++ +l +++ +H+ +HRDLKp N+ +d n++ +v
W09C3.1 113 N--FNQDTIIRVCIRTLLAIKTMHEYTYIHRDLKPCNFAVDFNpnSLHVY 160
iaDFGLArlle...........sssklttfvGTpwYmmAPEvilegrgys
+ D G+Ar++ +++++++ + ++ + +f GT +Y+ + ++++ s
W09C3.1 161 LFDYGMARKYAtkdsgnkwqlrRPRNPAQFRGTVRYC-SLNM-HKRKELS 208
skvDvWS<-*
+ D WS
W09C3.1 209 RVDDLWS 215
glutaredoxin: domain 1 of 1, from 308 to 345: score 7.6, E = 0.84
*->ellkklkvergdfevveidgeddgseiqdalakltkekeGqrTVP<-
+l+ +l++ +++ e++++dd+s+iq++l+ + G+ +VP
W09C3.1 308 ALVAELGE---TARPKELSRMDDESTIQKYLLASF----GRAGVP 345
*
W09C3.1 - -