Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09C5.6a
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Query: W09C5.6a CE20168 locus:rpl-31 Ribosomal protein L31e status:Confirmed TR:Q9U332 protein_id:CAB63331.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_L31e Ribosomal protein L31e 184.4 8e-57 1
Ribosomal_L38e Ribosomal L38e protein family 4.2 4.6 1
Pox_C7_F8A Poxvirus C7/F8A protein 4.1 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L38e 1/1 39 48 .. 1 10 [. 4.2 4.6
Pox_C7_F8A 1/1 41 64 .. 55 75 .. 4.1 5.6
Ribosomal_L31e 1/1 12 106 .. 1 97 [] 184.4 8e-57
Alignments of top-scoring domains:
Ribosomal_L38e: domain 1 of 1, from 39 to 48: score 4.2, E = 4.6
*->PrqIteIKdF<-*
Pr I eIK F
W09C5.6a 39 PRAIDEIKKF 48
Pox_C7_F8A: domain 1 of 1, from 41 to 64: score 4.1, E = 5.6
*->eIdevK...PirmklNgkkvdveL<-*
+Ide+K+ +i+mk N++ vd++L
W09C5.6a 41 AIDEIKkfaKIQMKTNDVRVDTKL 64
Ribosomal_L31e: domain 1 of 1, from 12 to 106: score 184.4, E = 8e-57
*->evkevvtReYTInLrkrlhkvsfkKRAPrAiKeIrkFakkhMgtDed
++evvtReYTI+++ r+ + + kKRAPrAi eI+kFak M+t
W09C5.6a 12 TINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKT--N 56
dVRlDpeLNkaiWaRGiknvPyRvRVrisRkrNedEDAkeelyvlvtvAe
dVR+D++LNk iW++GiknvPyRvRVr+sR+rNedED+ +ly+l t+++
W09C5.6a 57 DVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVP 106
<-*
W09C5.6a - -