Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/W09G10.5
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Query:  W09G10.5  CE14772    status:Partially_confirmed TR:O16641 protein_id:AAB66113.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
lectin_c Lectin C-type domain                            31.7    8.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
lectin_c   1/1     103   164 ..    55   125 .]    31.7  8.8e-07

Alignments of top-scoring domains:
lectin_c: domain 1 of 1, from 103 to 164: score 31.7, E = 8.8e-07
                   *->integtwvwegwetdgspvnyt.enWapgePnnrgnhGgnEdCveiy
                      + +  +++w    tdgs v   +++W++gePnn g+    + C+ +
    W09G10.5   103    CSQITSYYW----TDGSTVGVQgFYWNSGEPNNQGG----QGCAKLI 141

                   tdtdflaGkWnDepCdskl..pyvCef<-*
                   t+++     ++D++C + l+++yvC +
    W09G10.5   142 TSSS----VLDDVACTTELtnGYVCGK    164



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