Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09G10.4a
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Query: W09G10.4a CE24044 locus:apt-5 status:Partially_confirmed TR:O16637 protein_id:AAB66112.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Adaptin_N Adaptin N terminal region 667.6 6.5e-197 1
L1L_F9_C19 L1L/F9/C19 pox virus orf family 3.1 10 1
trp_syntA Tryptophan synthase alpha chain 2.4 9.3 1
Herpes_UL6 Herpesvirus UL6 like 2.3 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
L1L_F9_C19 1/1 20 41 .. 216 237 .] 3.1 10
Herpes_UL6 1/1 520 532 .. 588 600 .] 2.3 4.7
Adaptin_N 1/1 32 584 .. 1 629 [] 667.6 6.5e-197
trp_syntA 1/1 578 611 .. 231 265 .] 2.4 9.3
Alignments of top-scoring domains:
L1L_F9_C19: domain 1 of 1, from 20 to 41: score 3.1, E = 10
*->dkikrrLalkpdeyryttflyv<-*
d+i+ ++++k +e+ry+t+
W09G10.4a 20 DLIRGIRNNKDNESRYITQCME 41
Herpes_UL6: domain 1 of 1, from 520 to 532: score 2.3, E = 4.7
*->LevYitdIgakyc<-*
L vY++ Ig +yc
W09G10.4a 520 LSVYVQNIGKLYC 532
Adaptin_N: domain 1 of 1, from 32 to 584: score 667.6, E = 6.5e-197
*->ekkeitqelaeilnsfkddKkLdpykkkdavkKliylimlGnedisf
e ++itq+++ei++++++d ++y+k++a+ Kl+yl+mlG +dis+
W09G10.4a 32 ESRYITQCMEEIKQELRQD---SIYVKANAIEKLAYLQMLG-YDISW 74
lfaevvklvaskkfelKrlgLRrmVYLylkllaeespDGklhlaiLatnt
+ ++v++++as k+++Kr+g YL++ ++++ +D +++L+tn+
W09G10.4a 75 ASFNVIEVMASTKYTEKRIG-----YLAAAQSFHDETD----VLMLTTNL 115
ikkDLqspNplirglALrtLscirvpelardlapdikkllvdespnpyVR
i+kD++s+N++ g+AL +Lsc+++p+lardla d+ +ll++ ++ y R
W09G10.4a 116 IRKDVNSSNMYESGIALGGLSCFVTPDLARDLAADVVNLLSC--SRNYTR 163
kkAalailkLyrkdpelvernglvedlkelLsDsnpgVvsaavaaldeic
k A+l ++k+++k+p+++++ +++lke+L+D++pgV+s+av++++e++
W09G10.4a 164 KRAVLLLYKIFLKYPDALRP--TFPRLKEKLEDPDPGVQSSAVNVICELA 211
krnpdllllfrDlklvplLvrfvrlfrklltalsdlnewggnsvpqpfll
++np+++l+++ ++f+kl+t+ + n+w+ l
W09G10.4a 212 RKNPKNYLTLA------------PVFFKLMTT--SSNNWM---------L 238
vkLiklLrlllrkdlvepdpklGlngkdlselltfilqlvntkvelskvq
+k+i + l++ +lv+ +p+l gk+l e+lt+++++++++++l+
W09G10.4a 239 IKII---K-LFG-ALVPLEPRL---GKKLLEPLTNLINSTSAMSLLY--- 277
hknvsnavlfvliltisdldsapelivlainkLlvlLlssdpnlrYvaLr
+++n+v++vli+++ + +++++i+l+++kL+vl+++sd+nl+Y++L
W09G10.4a 278 --ECINTVIAVLISISAG-GDHTASIQLCVQKLGVLIEDSDQNLKYLGLL 324
nlnkivmsekhpskehekavqrhrlkiffclstdddisIrlraLdlLykL
++ ki++ +hp+ avq+h++ +++cl+ d+d+sIr+r LdlLy++
W09G10.4a 325 AMGKILK--THPK-----AVQAHKDIVLRCLD-DKDESIRIRSLDLLYGM 366
vdesNvkeivkeLleyveeadndehetfvriavvaiirlaceksnYqypt
v+++N+ eivk+L+e+ve a+++ ++r+++ + i+ +c++snYqy+t
W09G10.4a 367 VSKKNIVEIVKKLMEHVEAAEGS----HYRDELLSRIIGICSWSNYQYIT 412
daewcidvLleLLklleggyvvaeaivvqiidiirkyPelreyaVseiit
++ew+i+vL+eL k +g++++++i++qi d+ ++++++r+++Vs++
W09G10.4a 413 NFEWYISVLVELTK--VEGTEHGAKIAEQIQDVTVRVESIRHFSVSQMAL 460
lLaalle....sies...mpearaaaiWIlGEygelipdiapvleseps.
l+++ ++ +s++++++m+e++ aa+WI+GEy++++ + + vles+++
W09G10.4a 461 LVENAHVllagSAQQrsnMCEVLLAAAWICGEYSQHVRNQQGVLESMLKa 510
e..vtpshidllreiaenfslenlevraqlLtalvKLyltkpdifqqakv
+++v+p+hi++++++++++ +++l+ +a + ++ ++++
W09G10.4a 511 KpsVMPGHILSVYVQNIGKLYCSLMSQAEEEDDWDAIDSLD--------- 551
geiqpveelvqsvlqlalnssdnelElRDRAreylrllslad<-*
+l+ s+l +++ s++ lE ++RA+ ++ +++ +
W09G10.4a 552 -------NLMLSKLPQFELSEH--LEAQERACNLMAIIRIVE 584
trp_syntA: domain 1 of 1, from 578 to 611: score 2.4, E = 9.3
*->AiVdiIeknaegeeqmleelyellslag.kmKkatk<-*
Ai++i+ek +++++m +e+++l + +g+ atk
W09G10.4a 578 AIIRIVEKLHQDRQKMGSEVQKL-Y-DGeLNPVATK 611