Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W09G12.4
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Query: W09G12.4 CE18343 status:Partially_confirmed TR:O45201 protein_id:AAC04450.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DSL Delta serrate ligand 38.1 2.7e-10 1
EGF EGF-like domain 15.8 0.0094 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSL 1/1 112 164 .. 11 67 .] 38.1 2.7e-10
EGF 1/2 155 164 .. 31 45 .] 5.7 6.6
EGF 2/2 175 209 .. 7 45 .] 15.8 0.0093
Alignments of top-scoring domains:
DSL: domain 1 of 1, from 112 to 164: score 38.1, E = 2.7e-10
*->tslGfnleyrirvtCdenYYGegCnkFCrPrdDafgHytCdenGnkl
+ + ++r++++C+++++G +C +FC ++ ++C +nG +
W09G12.4 112 P----FTGFRYDIKCNRYWHGLHCDHFCNDDFARTINRRCTQNGTLG 154
CleGWkGeyC<-*
CleG G++C
W09G12.4 155 CLEGFHGPNC 164
EGF: domain 1 of 2, from 155 to 164: score 5.7, E = 6.6
*->CppGdyylsytGkrC<-*
C +G ++G++C
W09G12.4 155 CLEG-----FHGPNC 164
EGF: domain 2 of 2, from 175 to 209: score 15.8, E = 0.0093
*->CsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-*
C+ngG+Cv++ ++ + +g+ CeC G ++ Gk+C
W09G12.4 175 CQNGGKCVSSLENTWAQNGSLICECRLG----HFEGKHC 209