Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/W10D5.3c
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  W10D5.3c  CE14784  locus:gei-17  status:Partially_confirmed TR:Q94361 protein_id:CAB02133.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-MIZ   MIZ zinc finger                                125.7      2e-42   1
PHD      PHD-finger                                       3.9        4.7   1
pkinase  Protein kinase domain                            3.5        6.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1      92   111 ..   273   294 .]     3.5      6.9
PHD        1/1     438   470 ..    22    51 .]     3.9      4.7
zf-MIZ     1/1     421   473 ..     1    53 []   125.7    2e-42

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 92 to 111: score 3.5, E = 6.9
                   *->nkDPskRpGsatakeilnhpwf<-*
                      n+ ++kRp  at  ++  hp++
    W10D5.3c    92    NYEMQKRP--ATTSQVRSHPYV    111

PHD: domain 1 of 1, from 438 to 470: score 3.9, E = 4.7
                   *->CdrwfHlaClgpple...eppegkWlCpeCtpk<-*
                      C ++ Hl C ++      ++++ +W+Cp C +
    W10D5.3c   438    CQDCTHLQCFDLLSYlmmNEKKPTWQCPVCSSN    470

zf-MIZ: domain 1 of 1, from 421 to 473: score 125.7, E = 2e-42
                   *->vSLkCPLsktRmklPaRgheCKHlQCFDllayLqmNekkPtWrCPvC
                      +SL++PL+ktRm++P+R+++C+HlQCFDll+yL+mNekkPtW+CPvC
    W10D5.3c   421    ISLLDPLCKTRMTTPSRCQDCTHLQCFDLLSYLMMNEKKPTWQCPVC 467

                   nknaky<-*
                   ++n++y
    W10D5.3c   468 SSNCPY    473



[DB home][top]