Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W10D5.3c
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Query: W10D5.3c CE14784 locus:gei-17 status:Partially_confirmed TR:Q94361 protein_id:CAB02133.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-MIZ MIZ zinc finger 125.7 2e-42 1
PHD PHD-finger 3.9 4.7 1
pkinase Protein kinase domain 3.5 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 92 111 .. 273 294 .] 3.5 6.9
PHD 1/1 438 470 .. 22 51 .] 3.9 4.7
zf-MIZ 1/1 421 473 .. 1 53 [] 125.7 2e-42
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 92 to 111: score 3.5, E = 6.9
*->nkDPskRpGsatakeilnhpwf<-*
n+ ++kRp at ++ hp++
W10D5.3c 92 NYEMQKRP--ATTSQVRSHPYV 111
PHD: domain 1 of 1, from 438 to 470: score 3.9, E = 4.7
*->CdrwfHlaClgpple...eppegkWlCpeCtpk<-*
C ++ Hl C ++ ++++ +W+Cp C +
W10D5.3c 438 CQDCTHLQCFDLLSYlmmNEKKPTWQCPVCSSN 470
zf-MIZ: domain 1 of 1, from 421 to 473: score 125.7, E = 2e-42
*->vSLkCPLsktRmklPaRgheCKHlQCFDllayLqmNekkPtWrCPvC
+SL++PL+ktRm++P+R+++C+HlQCFDll+yL+mNekkPtW+CPvC
W10D5.3c 421 ISLLDPLCKTRMTTPSRCQDCTHLQCFDLLSYLMMNEKKPTWQCPVC 467
nknaky<-*
++n++y
W10D5.3c 468 SSNCPY 473