Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/W10G6.3
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Query: W10G6.3 CE18354 locus:ifa-2 intermediate filament protein status:Partially_confirmed TR:O02365 protein_id:CAB03486.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IF_tail Intermediate filament tail domain 282.7 4.7e-81 1
filament Intermediate filament protein 247.0 2.7e-70 1
Myosin_tail Myosin tail 6.8 0.59 1
Ran_BP1 RanBP1 domain 6.0 1.9 1
ferritin Ferritin-like domain 4.9 3.9 1
Tropomyosin Tropomyosin 4.2 3.3 1
Pox_mRNA-cap Poxvirus mRNA capping enzyme, small subu 2.9 5.6 1
DUF707 Protein of unknown function (DUF707) 2.7 5.8 1
Pox_A11 Poxvirus A11 Protein 1.3 6.9 1
Cnd1 Non-SMC condensin subunit, XCAP-D2/Cnd1 0.5 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF707 1/1 58 109 .. 290 345 .] 2.7 5.8
Cnd1 1/1 142 151 .. 1244 1253 .] 0.5 9.4
ferritin 1/1 141 159 .. 137 155 .] 4.9 3.9
Ran_BP1 1/1 148 166 .. 109 127 .] 6.0 1.9
Myosin_tail 1/1 122 169 .. 158 205 .. 6.8 0.59
Tropomyosin 1/1 144 204 .. 1 54 [. 4.2 3.3
Pox_A11 1/1 193 207 .. 160 174 .. 1.3 6.9
Pox_mRNA-cap 1/1 315 333 .. 269 287 .] 2.9 5.6
filament 1/1 70 423 .. 1 359 [] 247.0 2.7e-70
IF_tail 1/1 438 574 .. 1 144 [] 282.7 4.7e-81
Alignments of top-scoring domains:
DUF707: domain 1 of 1, from 58 to 109: score 2.7, E = 5.8
*->eegkapwqgvrerckrEwtmvdnrpevrmksfvemkrFqeRvkkAek
+++ + + rer+k+E + + r+ s++e rF + ++
W10G6.3 58 QNAASTIRDNREREKKEIME----LNDRLASYIEKVRFLDAQNRKLD 100
dyfkslavk<-*
+++k l+ +
W10G6.3 101 ADLKMLQGR 109
Cnd1: domain 1 of 1, from 142 to 151: score 0.5, E = 9.4
*->nekglkKLlD<-*
+ek ++KL+D
W10G6.3 142 TEKEIRKLQD 151
ferritin: domain 1 of 1, from 141 to 159: score 4.9, E = 3.9
*->eqeehiwmleaqltnlkrl<-*
e e++i +l++ql+ l++
W10G6.3 141 ETEKEIRKLQDQLDELRKK 159
Ran_BP1: domain 1 of 1, from 148 to 166: score 6.0, E = 1.9
*->KtkEeAdeFKkkFEeaqke<-*
K ++ de+ kkFEeaq+
W10G6.3 148 KLQDQLDELRKKFEEAQRG 166
Myosin_tail: domain 1 of 1, from 122 to 169: score 6.8, E = 0.59
*->qaEvddllaqldsitKaKlnaEKkakqlEsQlsElqvKldElqRqln
++E+ ++ + + K+ ++ EK +++l++Ql El+ K +E+qR +
W10G6.3 122 EMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQRGRA 168
D<-*
+
W10G6.3 169 E 169
Tropomyosin: domain 1 of 1, from 144 to 204: score 4.2, E = 3.3
*->KKiqqteeeldkaeEelekaqr.......eLeeeekkreeAEaEVAs
K i++++++ld+ + e+aqr++ +++ +++ + + + EaE+
W10G6.3 144 KEIRKLQDQLDELRKKFEEAQRgraedrlKIDDLLVTLSNLEAEINL 190
LNRRIQLvEEeLdR<-*
L RRI L+EEe R
W10G6.3 191 LKRRIALLEEEVAR 204
Pox_A11: domain 1 of 1, from 193 to 207: score 1.3, E = 6.9
*->KRiqLLEeEVanLRn<-*
+Ri LLEeEVa L++
W10G6.3 193 RRIALLEEEVARLKK 207
Pox_mRNA-cap: domain 1 of 1, from 315 to 333: score 2.9, E = 5.6
*->SdsKSIENeyQkkLvKLLl<-*
S ++ EN yQk vK L+
W10G6.3 315 SNRQNAENNYQKEEVKRLR 333
filament: domain 1 of 1, from 70 to 423: score 247.0, E = 2.7e-70
*->nEKeqmQnLNDRLAsYIdKVRfLEqqNkeLevkieelrqkqsrggpa
EK ++++LNDRLAsYI+KVRfL++qN++L++ ++ l+++ +
W10G6.3 70 REKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGK---- 112
svsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrkKyed
s ++ +Ye ei + +++ q++++ + + Ei +l++ l+++rkK+e+
W10G6.3 113 STGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEE 162
KeDLaaQn.......qlkdlEialntkeaeLaTaL.eRqeaEndlvgLRa
aQ ++ +++ ++ dl + l +eae + + + + +E++++ L+
W10G6.3 163 -----AQRgraedrlKIDDLLVTLSNLEAEINLLKrRIALLEEEVARLKK 207
QiAklE.sla.aRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvke
+ +l + l + R +lD++TL r+D +nkv + EE++F+K+ +e E+ke
W10G6.3 208 ENFRLTsELQrVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKE 257
LqaqiqdtgqvnVEmDaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaE
Lqaq++++ ++ E ++++ k++L+ a+r+iRa+Y++i++ nr ++E
W10G6.3 258 LQAQAARD--TTSENREYF----KNELANAMRDIRAEYDQIMNGNRNDME 301
ewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqna
+wY+ +++e++t+ +r++++ ++KeE++ lR q +L+ +L +l+s n
W10G6.3 302 SWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNL 351
sLErqlaElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLLd
LE+q+++l++++e +++ y+a+++++++++++lreE++++ E+Q LLd
W10G6.3 352 LLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLD 401
VKlaLDiEIATYRKLLEGEEsR<-*
+K+ LD E YR +LEG +
W10G6.3 402 TKQTLDGELKVYRQMLEGNSEG 423
IF_tail: domain 1 of 1, from 438 to 574: score 282.7, E = 4.7e-81
*->ssaekgkrrsiregeGritetssktsyqrsAkGnVsIeEaDpeGKFv
+++e+++++++r+++G e+ss+tsyqrsAkGnV+I+E +peGKFv
W10G6.3 438 AINEEADTETMRVVKG---EHSSRTSYQRSAKGNVAIKETSPEGKFV 481
rLeNtSrskkdeslGgWkLkRkidgkeereivYkFppkfvLkpgqtVkIW
+LeNt+r+ k+e+lG+WkLkRkidgk reiv++Fp++++L+p q+VkI+
W10G6.3 482 ILENTHRA-KEEPLGDWKLKRKIDGK--REIVFTFPSDYILHPFQSVKIF 528
AagaGavhsPPsdLvwksqdsWGtGsnvrTiLvNseGEEvAshtqkt<-*
A+g+G +++PP+ L+++++ ++G+G+nv+TiL+N +GEE+A+h+q++
W10G6.3 529 ARGQG-IANPPEVLIFEGDETFGVGANVQTILYNNKGEERATHIQRQ 574
[output cut off at A = 10 top alignments]