Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y106G6E.6
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Query: Y106G6E.6 CE29604 casein kinase like status:Partially_confirmed TR:Q8WQ99 protein_id:CAB60309.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 102.2 3.2e-27 2
Mn_catalase Manganese containing catalase 1.0 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/2 28 57 .. 1 31 [. 20.1 0.00018
Mn_catalase 1/1 137 151 .. 1 16 [. 1.0 8.7
pkinase 2/2 94 255 .. 71 249 .. 83.1 6e-22
Alignments of top-scoring domains:
pkinase: domain 1 of 2, from 28 to 57: score 20.1, E = 0.00018
*->yelleklGeGsfGkVykakhkdktgkiVAvK<-*
+++++k+G G+fG+ +++k++ +++++VA+K
Y106G6E.6 28 FKVGKKIGCGNFGELRLGKNL-YNNEHVAIK 57
Mn_catalase: domain 1 of 1, from 137 to 151: score 1.0, E = 8.7
*->MFkvhdKkLQyp.aKpd<-*
+ vh+K+L+y ++Kp+
Y106G6E.6 137 -Y-VHTKHLIYRdVKPE 151
pkinase: domain 2 of 2, from 94 to 255: score 83.1, E = 6e-22
*->ddhlylvmEymegGdLfdylrrnggplsekeakkialQilrGleYLH
+++ lvmE++++ +L d++ +++++s k + ++a Q+ r +eY H
Y106G6E.6 94 GKYNALVMELLGH-SLEDLFDLCDRHFSLKTVAMVAMQLIRRIEYVH 139
sngivHRDLKpeNILlden....dgtvKiaDFGLArlle........sss
++ ++RD+KpeN+L+ + ++++++++ i+DFGLA+++ + +++++ +
Y106G6E.6 140 TKHLIYRDVKPENFLIGRYstrkQHVLHIIDFGLAKEYIdcdtgkhiAYR 189
klttfvGTpwYmmAPEvilegrgysskvDvWSlGviLyElltggplfpga
+++++GT +Ym + +g++ s++ D +lG ++ + l g
Y106G6E.6 190 EHKSLTGTARYM-SINT-HLGKEQSRRDDLEALGHMFMYFLRG------- 230
dlpaftggdevdqliifvlklPfsdelpktridpleelfriikr<-*
lP+++ +t ++ ++++ + +++
Y106G6E.6 231 -------------------SLPWQGLKADTLKERYQKIGDTKRQ 255