Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y106G6H.3
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Query: Y106G6H.3 CE20413 locus:rpl-30 status:Partially_confirmed TR:Q9XWS4 protein_id:CAA21573.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd4 138.6 5.7e-40 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L7Ae 1/1 12 106 .. 1 100 [] 138.6 5.7e-40
Alignments of top-scoring domains:
Ribosomal_L7Ae: domain 1 of 1, from 12 to 106: score 138.6, E = 5.7e-40
*->dkllevlkkAlktgklvlGlkevtKaLergeakLViiAeDvdpeekv
+++++ l ++ktg++vlG+k+++K+L +g+akLViiA++++p++k+
Y106G6H.3 12 ENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKS 58
kdTlipalcelseknvPyvyvpskkeLGeacGkpvpdvsalaikdegdsk
+ i+++++l++++v+++ +++ eLG+acG+ ++ v++la++d+gds+
Y106G6H.3 59 E---IEYYAMLAKTGVHHYNGNN-IELGTACGRLFR-VCTLAVTDAGDSD 103
ilv<-*
i+
Y106G6H.3 104 IIL 106