Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A2AL.9
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Query: Y110A2AL.9 CE23219 status:Partially_confirmed TR:Q9N499 protein_id:AAF60397.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CC CC domain 83.8 4.1e-23 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CC 1/3 3 16 .. 23 36 .] 12.8 0.041
CC 2/3 19 54 .. 1 36 [] 63.2 5e-17
CC 3/3 72 99 .. 9 36 .] 19.1 0.00057
Alignments of top-scoring domains:
CC: domain 1 of 3, from 3 to 16: score 12.8, E = 0.041
*->GqVlvvgdrCCaak<-*
++V+v+g+ CC++k
Y110A2AL.9 3 DTVMVNGNMCCESK 16
CC: domain 2 of 3, from 19 to 54: score 63.2, E = 5e-17
*->ssssalsCKsptgPaifGvCpaGqVlvvgdrCCaak<-*
++ss lsCKs+++Pa +G+C++G++l++g+rCCa+k
Y110A2AL.9 19 AVSSLLSCKSDMTPAGYGLCRPGYTLMYGYRCCATK 54
CC: domain 3 of 3, from 72 to 99: score 19.1, E = 0.00057
*->KsptgPaifGvCpaGqVlvvgdrCCaak<-*
+s +g a++GvCp G+ ++ g+ CC+++
Y110A2AL.9 72 NSVMGSAVNGVCPTGYSVTKGNLCCKTA 99