Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A2AL.3
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Query: Y110A2AL.3 CE25191 status:Partially_confirmed TR:Q9N498 protein_id:AAF60402.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CC CC domain 61.2 2e-16 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CC 1/2 26 61 .. 1 36 [] 60.0 4.5e-16
CC 2/2 78 105 .. 9 36 .] 5.3 7.2
Alignments of top-scoring domains:
CC: domain 1 of 2, from 26 to 61: score 60.0, E = 4.5e-16
*->ssssalsCKsptgPaifGvCpaGqVlvvgdrCCaak<-*
+++l+CK+p++Paif++Cp G+Vlv +d+CC++k
Y110A2AL.3 26 GIEAYLDCKGPMSPAIFRACPVGEVLVLEDNCCDSK 61
CC: domain 2 of 2, from 78 to 105: score 5.3, E = 7.2
*->KsptgPaifGvCpaGqVlvvgdrCCaak<-*
K++ Pai+ Cp G ++ g+ CC ++
Y110A2AL.3 78 KGAWAPAINNMCPTGSRVTKGYWCCYTE 105