Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y110A2AR.2
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Query: Y110A2AR.2 CE26044 locus:ubc-15 status:Partially_confirmed TR:Q9N490 protein_id:AAF60411.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UQ_con Ubiquitin-conjugating enzyme 134.5 3.9e-37 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UQ_con 1/1 17 140 .. 1 158 [. 134.5 3.9e-37
Alignments of top-scoring domains:
UQ_con: domain 1 of 1, from 17 to 140: score 134.5, E = 3.9e-37
*->ssaatkRLqkElkelqkdppdpkpgisaspvddrddednlfeWeatl
ss+a++RLqk++++l+ dp++gi+a p++d n++eW+++
Y110A2AR.2 17 SSSAVRRLQKDYAKLMQ---DPVDGIKALPNED-----NILEWHYC- 54
iiGPpgTpYegGvFkldieFPedYPfkPPkvrfvtpgevkFlTkiyHPNv
++G p+Tp+ gG++ ++ F e++P +PP ++++tp ++++
Y110A2AR.2 55 LRGSPDTPFYGGYYWGKVIFKENFPWSPPAITMITP----------NGRF 94
dsenGeiCLsILkdpgDDPgYelhperWsPaltlrsvLllsiqsLLsePn
+n ++CLsI+ ++hpe W+P +t+ +L+ ++ s+++
Y110A2AR.2 95 Q-TNTRLCLSIS---------DYHPESWNPGWTVSAILI-GLHSFMN--- 130
pesPlnaeaGA<-*
++sP+ + + A
Y110A2AR.2 131 ENSPAAGSI-A 140