Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y111B2A.15
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Query: Y111B2A.15 CE26632 protein-tyrosine sulphotransferase status:Confirmed SW:O77081 protein_id:CAC35844.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sulfotransfer Sulfotransferase domain 47.9 1.5e-12 2
A2M_N Alpha-2-macroglobulin family N-terminal 2.7 2.8 1
YscJ_FliF Secretory protein of YscJ/FliF family 2.7 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
A2M_N 1/1 1 18 [. 1 18 [. 2.7 2.8
YscJ_FliF 1/1 1 20 [. 1 26 [. 2.7 8.6
Sulfotransfer 1/2 69 97 .. 1 29 [. 29.9 1.9e-07
Sulfotransfer 2/2 231 268 .. 250 295 .. 17.9 0.00046
Alignments of top-scoring domains:
A2M_N: domain 1 of 1, from 1 to 18: score 2.7, E = 2.8
*->MgkdrllqlcLwllLllL<-*
M+k+r+l+l L+l+ L
Y111B2A.15 1 MRKNRELLLVLFLVVFIL 18
YscJ_FliF: domain 1 of 1, from 1 to 20: score 2.7, E = 8.6
*->mkklrklllvgalaAvvallllllll<-*
m+k+r l ++v++l++++l++
Y111B2A.15 1 MRKNREL------LLVLFLVVFILFY 20
Sulfotransfer: domain 1 of 2, from 69 to 97: score 29.9, E = 1.9e-07
*->pdDvlivtyPKSGTTWlqellslHPDVFY<-*
+ ++i ++P+SGTT ++++l++HP+V++
Y111B2A.15 69 SPFIFIGGVPRSGTTLMRAMLDAHPEVRC 97
Sulfotransfer: domain 2 of 2, from 231 to 268: score 17.9, E = 0.00046
*->pgnvLflrYEDLkrdPrgeikkiaeFLGlplseEeeegrldkilkh<
++n+L ++YE L+ P++++++i eFL++p dk+l+h
Y111B2A.15 231 EKNCLKVYYEQLVLHPEAQMRRITEFLDIP--------WDDKVLHH 268
-*
Y111B2A.15 - -