Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y111B2A.15
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Query:  Y111B2A.15  CE26632   protein-tyrosine sulphotransferase status:Confirmed SW:O77081 protein_id:CAC35844.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Sulfotransfer Sulfotransferase domain                    47.9    1.5e-12   2
A2M_N         Alpha-2-macroglobulin family N-terminal     2.7        2.8   1
YscJ_FliF     Secretory protein of YscJ/FliF family       2.7        8.6   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
A2M_N           1/1       1    18 [.     1    18 [.     2.7      2.8
YscJ_FliF       1/1       1    20 [.     1    26 [.     2.7      8.6
Sulfotransfer   1/2      69    97 ..     1    29 [.    29.9  1.9e-07
Sulfotransfer   2/2     231   268 ..   250   295 ..    17.9  0.00046

Alignments of top-scoring domains:
A2M_N: domain 1 of 1, from 1 to 18: score 2.7, E = 2.8
                   *->MgkdrllqlcLwllLllL<-*
                      M+k+r+l+l L+l+   L
  Y111B2A.15     1    MRKNRELLLVLFLVVFIL    18

YscJ_FliF: domain 1 of 1, from 1 to 20: score 2.7, E = 8.6
                   *->mkklrklllvgalaAvvallllllll<-*
                      m+k+r l      ++v++l++++l++
  Y111B2A.15     1    MRKNREL------LLVLFLVVFILFY    20

Sulfotransfer: domain 1 of 2, from 69 to 97: score 29.9, E = 1.9e-07
                   *->pdDvlivtyPKSGTTWlqellslHPDVFY<-*
                       + ++i ++P+SGTT ++++l++HP+V++
  Y111B2A.15    69    SPFIFIGGVPRSGTTLMRAMLDAHPEVRC    97

Sulfotransfer: domain 2 of 2, from 231 to 268: score 17.9, E = 0.00046
                   *->pgnvLflrYEDLkrdPrgeikkiaeFLGlplseEeeegrldkilkh<
                      ++n+L ++YE L+  P++++++i eFL++p          dk+l+h
  Y111B2A.15   231    EKNCLKVYYEQLVLHPEAQMRRITEFLDIP--------WDDKVLHH  268

                   -*

  Y111B2A.15     -    -



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