Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y113G7B.5
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Query: Y113G7B.5 CE23287 status:Partially_confirmed TR:Q9U2X8 protein_id:CAB54327.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 202.3 7.3e-57 1
F-box F-box domain 44.5 3.7e-10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 18 65 .. 1 46 [] 44.5 3.7e-10
FTH 1/1 142 285 .. 1 153 [] 202.3 7.3e-57
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 18 to 65: score 44.5, E = 3.7e-10
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
+s++d+P e + +I+ ++dp ++l++++V++++r+++d+ ++ f+++
Y113G7B.5 18 PSFSDMPMETVYKIVGKVDPYSRLAVRKVCRNLRNVIDDTdPGFkYV 64
l<-*
+
Y113G7B.5 65 K 65
FTH: domain 1 of 1, from 142 to 285: score 202.3, E = 7.3e-57
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
+++ve+++++ +s + +lh+kki+l+ f++++v +L+++++g+Le
Y113G7B.5 142 SKQFVEWIRDIAQS-GILLHTKKIKLDIFPLKDVFGVLSHCKPGFLE 187
eIelkssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfHFee
+Ie+ ++ ++ + ++i++LeQWK+AKs++ie++v+ ++pIEh+fHF++
Y113G7B.5 188 DIEF--YCYDSAGKMDEIINLEQWKRAKSINIEGRVCEDIPIEHFFHFSR 235
FditldsfsveDAiKIRDiLlksstFesctiFesdvfefsnsnpieiarv
++i+l ++sv+DAiKIRD+L+ks++Fe+++i + + ++++r
Y113G7B.5 236 ITIKLRKLSVSDAIKIRDDLMKSAHFEYAYI------KIIEGVDPDVLRA 279
FdPdye<-*
+P+y
Y113G7B.5 280 INPNYH 285