Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y113G7B.4
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Query: Y113G7B.4 CE23286 status:Partially_confirmed TR:Q9U2X9 protein_id:CAB54326.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 195.5 8.3e-55 1
F-box F-box domain 41.4 2.5e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 18 65 .. 1 46 [] 41.4 2.5e-09
FTH 1/1 144 285 .. 1 153 [] 195.5 8.3e-55
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 18 to 65: score 41.4, E = 2.5e-09
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
+sl ++P e++ +I ++dp ++l++++V++++r+++d+ ++ f+k+
Y113G7B.4 18 PSLFEMPTEMVYKIAGKVDPFSRLTVRKVCRNLRNVIDDTdPGFkKV 64
l<-*
Y113G7B.4 65 E 65
FTH: domain 1 of 1, from 144 to 285: score 195.5, E = 8.3e-55
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
+++ve+l+e+ +s + +lh+k+i++ +++ +++ +L+++++g+Le
Y113G7B.4 144 SKEFVEWLREITQS-GSLLHTKRIRVIDCPG-DLLGVLSHCKPGFLE 188
eIelkssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfHFee
Ie+ ++ + ++++i++LeQWK+AKs++i+s+ ++++pIEh+fHF++
Y113G7B.4 189 AIEF---YCFNSGKIDEITNLEQWKRAKSINIDSRRCDDIPIEHFFHFSR 235
FditldsfsveDAiKIRDiLlksstFesctiFesdvfefsnsnpieiarv
F+i + ++sv DAiKIRD+L+ks++Fe+++i + ++ ++e arv
Y113G7B.4 236 FTIRMGKLSVPDAIKIRDDLMKSAHFEYGII------DIYDELTPEAARV 279
FdPdye<-*
F+P++
Y113G7B.4 280 FNPNFI 285