Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y116A8C.16
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Query: Y116A8C.16 CE29062 status:Partially_confirmed TR:Q9U2V5 protein_id:CAB55122.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Rhomboid Rhomboid family 169.5 5.5e-47 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Rhomboid 1/1 446 590 .. 1 161 [] 169.5 5.5e-47
Alignments of top-scoring domains:
Rhomboid: domain 1 of 1, from 446 to 590: score 169.5, E = 5.5e-47
*->lvq.gqlWRpeLiTsmFlHasGilHLlfNmlaLlffGiplErilGsl
+ + q++R L+Ts+F+Ha G++HL++ +l++++++ +lE+ + s+
Y116A8C.16 446 GDNpNQFYR--LFTSLFVHA-GVIHLALSLLFQYYVMKDLENLIASK 489
rflllYllsGlaGgvsllsllfspa...vGASGAifGllgallvllprnr
r+++lY++sG++G +l+s++f p+++ vG S A +G+l+a++v++ nr
Y116A8C.16 490 RMAILYFASGIGG--NLASAIFVPYnpaVGPSSAQCGILAAVIVECCDNR 537
ill.....alllllilillnllfglsllpgisnfapglaggavagsgqva
+ +++ + al+ li+ ll+l++g+ +p+++n+a
Y116A8C.16 538 RIIkefkwALVQHLIVTLLVLCIGF--IPWVDNWA--------------- 570
yaAHlgGflaGlllgfillrrpr<-*
Hl+G ++Gll ++i++++
Y116A8C.16 571 ---HLFGTIFGLLTTIIIFPYLD 590