Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y119D3B.6
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Query: Y119D3B.6 CE27463 status:Partially_confirmed TR:Q95Y63 protein_id:AAK29720.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 103.2 5e-27 1
F-box F-box domain 37.2 3.4e-08 1
Pox_D2 Pox virus D2 protein 1.6 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 2 49 .. 1 46 [] 37.2 3.4e-08
Pox_D2 1/1 199 218 .. 1 21 [. 1.6 7
FTH 1/1 95 238 .. 1 153 [] 103.2 5e-27
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 2 to 49: score 37.2, E = 3.4e-08
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
l LP+e+++eI+++L p ++l+l+ VS+++r +vd++++ +k+
Y119D3B.6 2 VELGALPIEIVNEIIEKLKPVHRLTLRDVSRNFRAAVDNVgIDCeKV 48
l<-*
Y119D3B.6 49 E 49
Pox_D2: domain 1 of 1, from 199 to 218: score 1.6, E = 7
*->eldiKkiGLiNtdlLqNkkiv<-*
+ i+ i L+N+ + qN++i+
Y119D3B.6 199 AIKIRDI-LLNNATFQNCVIR 218
FTH: domain 1 of 1, from 95 to 238: score 103.2, E = 5e-27
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
r+++ esl ++Lk+ ++ ++++ l ++s+ e++ +Lp+F+ L
Y119D3B.6 95 RRIHSESLASTLKN-LENCTTRSLLLKDLSCHEILLLLPFFNV--LG 138
eIelkssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfHFee
eI++ + id++ + + QW + sl + + + + +hLfH+ +
Y119D3B.6 139 EISI--DGITCIDQLREVGQRSQWSKVTSLISRVWIKDMTILKHLFHLNR 186
FditldsfsveDAiKIRDiLlksstFesctiFesdvfefsnsn..pieia
F+++ +s++ve AiKIRDiLl+ +tF+ c i + ++ ++++eia
Y119D3B.6 187 FYVKAKSIPVESAIKIRDILLNNATFQNCVI------RIAEWKtgIPEIA 230
rvFdPdye<-*
+vF+Pdy+
Y119D3B.6 231 KVFQPDYT 238