Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y17G7B.7
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Query: Y17G7B.7 CE19040 locus:tpi-1 Triosephosphate isomerase status:Confirmed SW:Q10657 protein_id:CAA19447.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TIM Triosephosphate isomerase 531.9 2.6e-172 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIM 1/1 3 247 .] 1 257 [. 531.9 2.6e-172
Alignments of top-scoring domains:
TIM: domain 1 of 1, from 3 to 247: score 531.9, E = 2.6e-172
*->RKffVgGNWKmNGslesikelvedLnaakldadgekkveVVVaPPav
RKffVgGNWKmNG+ +s+ +v Lna+ +++ v+VVVaPPa
Y17G7B.7 3 RKFFVGGNWKMNGDYASVDGIVTFLNASADNSS----VDVVVAPPAP 45
yLdtarsllkgdKtdigvgAQNvykksnGAFTGEiSaemLkDlGitwVIL
yL++a+s+lk + + v+AQN+yk+++GAFTGEiS++m+kDlG +wVIL
Y17G7B.7 46 YLAYAKSKLK---AGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVIL 92
GHSERRtyfgEsDElvakKtaaALeqGLtVIaCIGEtLEEREAGkTieVV
GHSERR++fgEsD+l+a+Kt +ALe G++V++CIGE+LEEREAG T +V+
Y17G7B.7 93 GHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVN 142
arQlkAiadklkdeqaLwtnvVIAYEPVWAIGTGKvATPeQAQEVHaaIR
+rQl+Ai+dk w+n+VIAYEPVWAIGTGK+A+ eQAQEVH+ IR
Y17G7B.7 143 FRQLQAIVDKGVS----WENIVIAYEPVWAIGTGKTASGEQAQEVHEWIR 188
kwlaekvsaevAesvRIlYGGSVNaaNckeLaaqpDIDGFLVGGASLKap
+l+ekvs++vA+++RI+YGGSV+a+N++eL ++pDIDGFLVGGASLK p
Y17G7B.7 189 AFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK-P 237
eFvdIinaaq<-*
+Fv+Iina++
Y17G7B.7 238 DFVKIINARS 247