Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y17G7B.15b
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Query: Y17G7B.15b CE25223 locus:cnt-1 PH (pleckstrin homology) domain, Ank repeat (2 domains) status:Partially_confirmed TR:Q9XXH9 protein_id:C
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ArfGap Putative GTP-ase activating protein fo 156.2 7e-45 1
PH PH domain 69.0 4.8e-18 1
ank Ankyrin repeat 65.6 6.9e-17 3
Umbravirus_LDM Umbravirus long distance movement (LDM 2.4 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PH 1/1 192 289 .. 1 85 [] 69.0 4.8e-18
Umbravirus_LDM 1/1 376 384 .. 224 232 .] 2.4 7.1
ArfGap 1/1 363 488 .. 1 138 [] 156.2 7e-45
ank 1/3 606 638 .. 1 33 [] 32.2 2.3e-07
ank 2/3 639 671 .. 1 33 [] 30.7 6e-07
ank 3/3 672 692 .. 1 21 [. 4.8 15
Alignments of top-scoring domains:
PH: domain 1 of 1, from 192 to 289: score 69.0, E = 4.8e-18
*->vikeGwLlkks....kswkkRyfvLfndvLlyykdsk...kkpkgsi
v++eG+L+k+s++ k+w +R+f +++++Lly + s++ + +
Y17G7B.15b 192 VMMEGYLYKRSsnafKTWNRRWFQIKDKQLLYSHRSTdlePATIMEE 238
pLsgcqvek.pd....kncFeirt.drtlllqaeseeerkeWvkaiqsai
+L+ c v++ p++ ++ cFe++t++r +llqa+se +++W++a+q+ i
Y17G7B.15b 239 NLRICLVRPaPSnidrIGCFELVTpTRIHLLQADSESLCQDWMRALQRTI 288
r<-*
Y17G7B.15b 289 L 289
Umbravirus_LDM: domain 1 of 1, from 376 to 384: score 2.4, E = 7.1
*->qVCadCgkn<-*
+VCadCg +
Y17G7B.15b 376 EVCADCGSP 384
ArfGap: domain 1 of 1, from 363 to 488: score 156.2, E = 7e-45
*->qrvlklLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
+++++r+ + gN++C+DCg+ p P W+S+nlGv+lCieCSG HR+
Y17G7B.15b 363 TTAFEQVRRVP-GNEVCADCGS-PAPKWVSINLGVVLCIECSGAHRS 407
LfGvHiSkVnvRSltLDtWtpeeLrklesckgGNenansfwEsnlddfsl
L Gv+ SkV RSl +D+ + eLr ++ ++GN+ +n+++ ++l++ +
Y17G7B.15b 408 L-GVQTSKV--RSLCMDSIDN-ELRDVL-LALGNRQVNEIFLAHLPPADS 452
kpkdsdaaav.KCqddrqkyesfiaaKYeeklfrvlkeskee<-*
+ ++ +K ++r +e++i+aKY+e++f +e+ ++
Y17G7B.15b 453 IVPPQI---NeK--SARPAREAWIKAKYVERRF-AVAEDTRA 488
ank: domain 1 of 3, from 606 to 638: score 32.2, E = 2.3e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G T+LH+A ++g++ v++Ll +GA +n+ d
Y17G7B.15b 606 NGTTALHIATRNGQTAAVEFLLLNGAKINMLDE 638
ank: domain 2 of 3, from 639 to 671: score 30.7, E = 6e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
nTPLHlAak g++ v Ll+rGAd n+ ++
Y17G7B.15b 639 KLNTPLHLAAKEGHTLPVCQLLKRGADSNLANV 671
ank: domain 3 of 3, from 672 to 692: score 4.8, E = 15
*->dGnTPLHlAakrgnlevvklL<-*
d TPL +A ++ ++++v l+
Y17G7B.15b 672 DSKTPLDIAMECTHADIVTLF 692