Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y17G7B.5
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Query: Y17G7B.5 CE19038 locus:mcm-2 MCM2\/3\/5 family status:Partially_confirmed TR:Q9XXI9 protein_id:CAA19452.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MCM MCM2/3/5 family 897.9 3e-266 1
aldo_ket_red Aldo/keto reductase family 5.7 0.72 1
Molybdop_Fe4S4 Molybdopterin oxidoreductase Fe4S4 dom 4.7 6.6 2
PdxJ Pyridoxal phosphate biosynthesis prote 2.8 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Molybdop_Fe4S4 1/2 150 161 .. 45 56 .] 0.7 99
PdxJ 1/1 224 237 .. 260 273 .] 2.8 8.9
Molybdop_Fe4S4 2/2 321 331 .. 1 12 [. 3.7 13
aldo_ket_red 1/1 430 446 .. 353 369 .] 5.7 0.72
MCM 1/1 266 777 .. 1 617 [] 897.9 3e-266
Alignments of top-scoring domains:
Molybdop_Fe4S4: domain 1 of 2, from 150 to 161: score 0.7, E = 99
*->vKGrfgyefvys<-*
++Gr+++++v +
Y17G7B.5 150 IRGRTIRDHVSD 161
PdxJ: domain 1 of 1, from 224 to 237: score 2.8, E = 8.9
*->LekAVreMkalmkr<-*
L++A eM+a+m+r
Y17G7B.5 224 LPEAPNEMLAIMDR 237
Molybdop_Fe4S4: domain 2 of 2, from 321 to 331: score 3.7, E = 13
*->mkvvkTvCpvyC<-*
+ v +T+Cp C
Y17G7B.5 321 EEVRPTICP-SC 331
aldo_ket_red: domain 1 of 1, from 430 to 446: score 5.7, E = 0.72
*->eLteedmkkideldrgk<-*
+Lt+ed+k+i el +++
Y17G7B.5 430 QLTDEDIKAIRELSQDP 446
MCM: domain 1 of 1, from 266 to 777: score 897.9, E = 3e-266
*->kpisiReLrashigkLVrvsGiVtraSeVrPklkkavytCpkCghtv
+ iR Lr+ h++ L+r G+Vt aS++ P+l+++ y C Cg+ +
Y17G7B.5 266 VEEDIRMLRQVHLNMLIRTAGVVTIASGILPQLAVVKYDCVACGYLL 312
eveiqdlfinsftkptfcpsreCptcqskgdlkeNGdeCplgpfildhdk
++++q+ + ++ ++ Cp cq+k gpf+l+++
Y17G7B.5 313 GPFVQQN--DEEVR-----PTICPSCQGK------------GPFELNVEN 343
SkfvDfQelkiQElpeevPaGqiPRsvdvillddLVdkvkPGDrVevtGI
++++++Q++++QE+p++v aG++PRs dvill+dL+d++kPGD++evtG+
Y17G7B.5 344 TVYHNYQRITMQESPNKVAAGRLPRSKDVILLGDLCDSCKPGDEIEVTGV 393
yrvvpdvqLgpkkrlntsgsrGvtglkslgvgglvfktyieAnhieklds
y+++ d ++ln ++ g++vf t i+Anhi +d+
Y17G7B.5 394 YTNNFD------GSLNYKQ------------GFPVFNTLIHANHITNKDK 425
eiqdnkrlggrkDlegseeeiteelllsqlsdedeeeikklakdkkdiye
++ l+ded++ i++l++d+ +i +
Y17G7B.5 426 -------------------MASDQ-----LTDEDIKAIRELSQDP-NISQ 450
kLarSlAPsIYGhedVKKAILLlLfGGveKnlpdGtkdrlRGDINiLLvG
+ S+APsIYGh+dVK+AI+L+Lf G Kn++ +++ lRGDIN+LL+G
Y17G7B.5 451 RVFSSIAPSIYGHDDVKRAIALALFRGEAKNPGAKHR--LRGDINVLLCG 498
DPGKTAKSQlLKyVeklaPRAvYTsGkGSSaVGLaTAaVvRDpeTgEDwv
DPG TAKSQ+L+y +++aPR+v T+G+G+SaVGL TA+V+R p+T+E w+
Y17G7B.5 499 DPG-TAKSQFLRYAAHIAPRSVLTTGQGASAVGL-TAYVQRHPVTRE-WT 545
LEaGALVLADgGvcCIDEFDKMndsDRtaIHEAMEQQTISIAKAGItttL
LEaGA+VLAD+Gvc+IDEFDKM+d+DRt+IHEAMEQQ+ISI+KAGI+t+L
Y17G7B.5 546 LEAGAMVLADKGVCLIDEFDKMSDQDRTSIHEAMEQQSISISKAGIVTSL 595
NARcSvLAAANPiyGRYDpkktpieNIdLpapLLSRFDLiFvvlDepDee
ARc+v+AA NPi+GRY+p++t++eN+dL++p+LSRFD ++v++D +D +
Y17G7B.5 596 HARCTVIAASNPIGGRYNPTRTFAENVDLTEPILSRFDVLCVIRDSVDSV 645
kDeeLAkHvvdvHrhskP.eedgee.g.glvlasdadNkaeeeeieeepy
De+LAk+vv +Hr ++P+ + +g++l ee++++e ++
Y17G7B.5 646 EDERLAKFVVGNHRTHHPdAKKIVKeGdEL----------EEDQMDERTG 685
ekfDsllhgrkkekarsekleidggeidielLrkYIaYAReqikPkLsee
+ +i+++lLrkYI YARe+++P+L+e+
Y17G7B.5 686 VR-----------------------LIPQDLLRKYIIYAREKCHPTLPEQ 712
AaekiveaYvelRkddkrEsd.tgsasrstipITaRqLEsiIRLsEAhAK
+ek +++++++Rk Es+ tgs + IT+R+ Es+IRLsEAhAK
Y17G7B.5 713 HSEKFSNIFAQMRK----ESMaTGS-----VAITVRHVESMIRLSEAHAK 753
lrLsdeVeeeDVeeAirLireslk<-*
l+L+ +V +eD Air++ es++
Y17G7B.5 754 LHLRSYVNDEDCAAAIRVMLESFV 777