Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y18D10A.9
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Query: Y18D10A.9 CE21405 WD domain, G-beta repeat status:Partially_confirmed TR:Q9XW12 protein_id:CAA22322.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 153.3 4.1e-42 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 17 45 .. 10 39 .] 23.0 9.9e-05
WD40 2/6 57 95 .. 1 39 [] 25.7 1.7e-05
WD40 3/6 101 139 .. 1 39 [] 33.9 7.5e-08
WD40 4/6 146 184 .. 1 39 [] 30.9 5.6e-07
WD40 5/6 234 260 .. 12 39 .] 18.3 0.0021
WD40 6/6 270 311 .. 1 39 [] 35.6 2.5e-08
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 17 to 45: score 23.0, E = 9.9e-05
*->tspvtcvafspdsgpylasgSrDgtiklWd<-*
ts v+ ++++ g++las+++D+ +++W+
Y18D10A.9 17 TSRVWMTCWHHG-GRILASCGDDKAVRVWS 45
WD40: domain 2 of 6, from 57 to 95: score 25.7, E = 1.7e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++ + Ht +v++vafs d g++l+s+S D ++ ++
Y18D10A.9 57 ECRTTLDdSHTRAVRSVAFSND-GKCLVSASFDASVVVYQ 95
WD40: domain 3 of 6, from 101 to 139: score 33.9, E = 7.5e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ l+gH+s v c fs + ++la++SrD+++ W
Y18D10A.9 101 FAEVNKLeGHESEVKCAVFSKS-DEFLATCSRDKSVWFWQ 139
WD40: domain 4 of 6, from 146 to 184: score 30.9, E = 5.6e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ ++l+ Ht v va++p +l+s+S D +i+ +
Y18D10A.9 146 FSVSSILqPHTQDVKQVAWHPT-EDLLVSCSYDSSIRFYR 184
WD40: domain 5 of 6, from 234 to 260: score 18.3, E = 0.0021
*->pvtcvafspdsgpylasgSrDgtiklWd<-*
p ++va++ ++a+g+ D++i+l++
Y18D10A.9 234 PLYSVAWNST-NDVIATGGGDCKIRLFK 260
WD40: domain 6 of 6, from 270 to 311: score 35.6, E = 2.5e-08
*->geclatl.gHtspvtcvafspd..sgpylasgSrDgtiklWd<-*
e l + + H+ v+ va++p+++ +++l s+S+Dgti+lW+
Y18D10A.9 270 IEHLGVVgRHELDVNHVAWNPNpkFSNLLTSASDDGTIRLWE 311