Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y18H1A.1
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Query: Y18H1A.1 CE26957 status:Partially_confirmed TR:Q9BL95 protein_id:AAK21505.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 90.1 1.5e-24 1
Phage_Treg Lactococcus bacteriophage putative tran 4.8 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Y_phosphatase 1/1 152 375 .. 1 274 [] 90.1 1.5e-24
Phage_Treg 1/1 399 407 .. 50 58 .] 4.8 5.9
Alignments of top-scoring domains:
Y_phosphatase: domain 1 of 1, from 152 to 375: score 90.1, E = 1.5e-24
*->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtl.vvykkp
N++ N++ d+++ D++ VkL g DY+N + +d+p + + v+
Y18H1A.1 152 NPKFNQSEDFPALDSNLVKL--GKDYVNISLVDVP---LGrNVHL-- 191
kayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqYW
Q+P nT e FW+ v++ ++t I L ++ +
Y18H1A.1 192 -----GQAPVTNTEETFWKAVFDKRITHIDLLVGDETIEF---------F 227
PeeggeeggsltyGditVtlvseekk..ddddytvRtleltn.gdeskne
P + +++ +yG ++++++ +e +++d ++ +++ ++ +++
Y18H1A.1 228 PK---KAEDYTNYGQMWINNRRVEYVndDVYRFAIEVVPHGCsN------ 268
akqeklkgetrtVthyhytgWPDhgvPesg...pkslldflrkvrksqsq
+ ++ + +W+ vP + k l + + k+
Y18H1A.1 269 ---------SIICNVTVISNWKVDTVPLKQaiaIKEALGLNYFLLKAPA- 308
enesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleaegv
d ++++ G+GR+G f a+ ++ + +++
Y18H1A.1 309 ---------DEH--------AMIVSPRGAGRAGYFLALAVAVNTIDTKLA 341
vidifdivkelRsqRpgmVQteeQYiFiydaile<-*
+ i divk++RsqRp +V+++ QY+ +y +l+
Y18H1A.1 342 EPCIADIVKSIRSQRPRAVDSFCQYCSLYISLLY 375
Phage_Treg: domain 1 of 1, from 399 to 407: score 4.8, E = 5.9
*->YKAAVELTK<-*
YK VELTK
Y18H1A.1 399 YKKSVELTK 407