Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y1H11.2
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Query: Y1H11.2 CE30709 status:Predicted TR:Q8T7Z3 protein_id:AAM19064.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 53.6 3.9e-14 1
GST_C Glutathione S-transferase, C-terminal domain 17.1 0.0016 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 115 .. 1 88 [] 53.6 3.9e-14
GST_C 1/1 121 205 .. 1 89 [. 17.1 0.0016
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 115: score 53.6, E = 3.9e-14
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
s++l++f++r +ae++r+l Gv++e++r +
Y1H11.2 3 SYKLTYFDIRA--FAEPARMLFH-LGGVPFEDARMPTD--------- 37
peflklnPlm.L......................................
+ + ++ L +++ ++ + ++ + + + ++ +++ + +++ ++
Y1H11.2 38 DIVPGIQSDQfLalkekfagkaascrkllnfnfkwqtcthpinvptslkk 87
.pfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+pfg+ P+L+ + g+k+++S AI rYlar
Y1H11.2 88 tPFGRFPILEFD---GFKIAQSAAIQRYLAR 115
GST_C: domain 1 of 1, from 121 to 205: score 17.1, E = 0.0016
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
Gk+p e++a +d+ + ++ r l gkpe+ e ++
Y1H11.2 121 GKTP-EEEAYADSIVDQMKE-YIESFRPVLYAQKSGKPEE--EVKKI 163
eveealekllkvlealeeeLkghgkkylvGdkltlADialap<-*
+ ++++ + ++l+ Lk++++ +lvG+ lt+AD+++a+
Y1H11.2 164 HDDVYIPAKNNLIKILNRLLKDNKSGFLVGNGLTYADLVVAD 205