Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm5/seq/Y22F5A.3
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Query: Y22F5A.3 CE32008 SNAP-25 family status:Confirmed TR:O62414 protein_id:CAA16322.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SNAP-25 SNAP-25 family 90.9 7.5e-25 1
DUF16 Protein of unknown function DUF16 3.3 9.5 1
DUF159 Uncharacterized ACR, COG2135 2.3 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF16 1/1 50 83 .. 130 163 .] 3.3 9.5
SNAP-25 1/1 91 144 .. 1 74 [] 90.9 7.5e-25
DUF159 1/1 146 168 .. 241 263 .] 2.3 1.2
Alignments of top-scoring domains:
DUF16: domain 1 of 1, from 50 to 83: score 3.3, E = 9.5
*->leaqgetLqliletLqkingrLdsiekRLDklEs<-*
l++qge+L+ + +L+ in+ e+ L +E
Y22F5A.3 50 LDDQGEQLERCEGALDTINQDMKEAEDHLKGMEK 83
SNAP-25: domain 1 of 1, from 91 to 144: score 90.9, E = 7.5e-25
*->PwnKldepiktfksgedkkkawkaNdDekreaeGKVvssqPrsrved
PwnK+d++ kt +++kawk++dD G+V+s+qP r++
Y22F5A.3 91 PWNKTDDFEKT-----EFAKAWKKDDD------GGVISDQP--RIT- 123
ydrepmselagpsggYIQPqRITNDAR<-*
+++++m gp+ggYI ++ITNDAR
Y22F5A.3 124 VGDSSM----GPQGGYI--TKITNDAR 144
DUF159: domain 1 of 1, from 146 to 168: score 2.3, E = 1.2
*->DasdlelyQVSrlVgnvkNngpe<-*
D+ d QVS+ Vgn +N +
Y22F5A.3 146 DEMDENVQQVSTMVGNLRNMAID 168