Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm5/seq/Y22F5A.3
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Query:  Y22F5A.3  CE32008   SNAP-25 family status:Confirmed TR:O62414 protein_id:CAA16322.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SNAP-25  SNAP-25 family                                  90.9    7.5e-25   1
DUF16    Protein of unknown function DUF16                3.3        9.5   1
DUF159   Uncharacterized ACR, COG2135                     2.3        1.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF16      1/1      50    83 ..   130   163 .]     3.3      9.5
SNAP-25    1/1      91   144 ..     1    74 []    90.9  7.5e-25
DUF159     1/1     146   168 ..   241   263 .]     2.3      1.2

Alignments of top-scoring domains:
DUF16: domain 1 of 1, from 50 to 83: score 3.3, E = 9.5
                   *->leaqgetLqliletLqkingrLdsiekRLDklEs<-*
                      l++qge+L+  + +L+ in+     e+ L  +E
    Y22F5A.3    50    LDDQGEQLERCEGALDTINQDMKEAEDHLKGMEK    83

SNAP-25: domain 1 of 1, from 91 to 144: score 90.9, E = 7.5e-25
                   *->PwnKldepiktfksgedkkkawkaNdDekreaeGKVvssqPrsrved
                      PwnK+d++ kt     +++kawk++dD      G+V+s+qP  r++
    Y22F5A.3    91    PWNKTDDFEKT-----EFAKAWKKDDD------GGVISDQP--RIT- 123

                   ydrepmselagpsggYIQPqRITNDAR<-*
                   +++++m    gp+ggYI  ++ITNDAR
    Y22F5A.3   124 VGDSSM----GPQGGYI--TKITNDAR    144

DUF159: domain 1 of 1, from 146 to 168: score 2.3, E = 1.2
                   *->DasdlelyQVSrlVgnvkNngpe<-*
                      D+ d    QVS+ Vgn +N +
    Y22F5A.3   146    DEMDENVQQVSTMVGNLRNMAID    168



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